Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior

By E. Delong, C. Preston, T. Mincer, V. Rich, S. Hallam, N. Frigaard, Asunción Martínez, Matthew B. Sullivan, Robert A. Edwards, Beltran Rodriguez Brito and 2 more. Science, 2006

1,360 citations recorded by the source corpus.

Subfields: Ecology, Environmental Chemistry, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/2691124a718f4258fb322dac35c4a2cd76d119a1

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Citations in the corpus

CAMERA: A Community Resource for Metagenomics (2007, background): “]; metagenome data from the Hawaii Ocean Time Series Station ALOHA [”
Metagenomic Analyses: Past and Future Trends (2010, background): “Metagenomic approaches based on direct isolation of nucleic acids from environmental samples have proven to be powerful tools for comparing and for exploring the ecology (11) and metabolic profiling of complex environmental microbial communities (20, 125), as well as for identifying novel biomolecul”
The Marine Viromes of Four Oceanic Regions (2006, background): “[19], who observed a large number of viral similarities at one depth at the Hawaii Oceanic Time-series (HOT) station.”
Towards a better understanding of microbial carbon flux in the sea (2008, background): “Similarly, we know of vertical partitioning of bacterial assemblages along gradients of energy and nutrient availability (Field et al. 1997, DeLong et al. 2006), this partitioning being at a smaller scale than the horizontal partitioning (e.g. Acinas et al. 1997).”
VIROME: a standard operating procedure for analysis of viral metagenome sequences (2012, background): “…is that in many cases connections between 16S molecular In an effort to address this shortcoming, investigators have increasingly turned to shotgun sequencing of environmental DNA as a means to assess the potential physiological capabilities of microorganisms within natural communities [6-8].”
Microbial Surface Colonization and Biofilm Development in Marine Environments (2015, background): “The distinct temperature optima of the transient deepwater surfaceassociated and resident free-living microorganisms provide a reasonable explanation for findings of limited species exchange between particle-associated and free-living microbial communities throughout the water column (104, 128, 199)”
Linking metagenomics to aquatic microbial ecology and biogeochemical cycles (2019, background): “Such profiles are typically strongly correlated across intense transition zones, such as along redox gradients (Stewart et al. 2011) or oceanic depth profiles (DeLong 2006; Hu et al. 2018).”
Mechanisms of Microbial Carbon Sequestration in the Ocean - Future Research Directions (2014, background): “This is supported by evidence suggesting that carbon-limited deep-ocean prokaryotes show a preferential particle-related life strategy (DeLong et al., 2006; Arístegui et al., 2009; Baltar et al., 2009, 2010b).”
The role of terrestrially derived organic carbon in the coastal ocean: A changing paradigm and the priming effect (2011, background): “Recent work has also shown that a greater number of genes are produced for polysaccharide degradation by microbial populations living in deep oceanic water than in surface waters (101).”
Standing stocks and activity of Archaea and Bacteria in the western Arctic Ocean (2007, methodology): “Metagenomic data indicate that Euryarchaeota (Group 2) and Crenarchaeota are equally common in the North Pacific at 500 m (DeLong et al. 2006).”
Microbial oceanography of the dark ocean's pelagic realm (2009, methodology): “The only available integrated genomic survey of microbial communities along well-defined open-ocean environmental gradients (Delong et al. 2006) reports a high abundance of genes responsible for glyoxylate and dicarboxylate metabolism, corresponding to the relatively more oxidized and degraded DOM…”