genotype and genodive: two programs for the analysis of genetic diversity of asexual organisms
By P. Meirmans, P. H. Tienderen. 2004
1,952 citations recorded by the source corpus.
Subfields: Ecology, Evolution, Behavior and Systematics, Genetics
View Paper: https://www.semanticscholar.org/paper/2105cf67e643f73b0812ddd3252d23b812330fb3
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Ecology, Evolution, Behavior and Systematics
- Niklaus J. Grünwald
- Zhian N. Kamvar
- J. C. Brooks
- David J. Winter
- Nicholas G. Crawford
- F. Alberto
- E. Serrão
- S. Arnaud-Haond
In Genetics
- David J. Winter
- P. Meirmans
- Niklaus J. Grünwald
- Zhian N. Kamvar
- J. Tabima
- Peter E. Smouse
- Rod Peakall
- J. C. Brooks
Citations in the corpus
- genodive version 3.0: Easy‐to‐use software for the analysis of genetic data of diploids and polyploids (2020, methodology): “…program for the analysis of population genetic and population genomic data. genodive version 3.0 is a major update from the previously published version version 1.0, which was a command line tool that performed only a single task, the estimation of clonal diversity (Meirmans & Van Tienderen, 2004).”
- Standardizing methods to address clonality in population studies (2007, methodology): “© 2007 The Authors Journal compilation © 2007 Blackwell Publishing Ltd has been proposed four times so far, to our knowledge (Douhovnikoff & Dodd 2003; Meirmans & Van Tienderen 2004; Arnaud-Haond et al. 2005; Rozenfeld et al. 2007).”
- Deep reefs are climatic refugia for genetic diversity of marine forests (2016, positive): “Genetic differentiation was estimated between sites and within the main genetic clusters using both F ST and Jost’s D , using Genodive 2.0 (Meirmans & Van Tienderen, 2004).”
- Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality (2015, methodology): “Clonal assignment has previously been available in the programs G EN C LONE and G ENODIVE for classical markers (Meirmans and Van Tienderen, 2004; Arnaud-Hanod et al., 2007).”
- GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update (2012, background): “, 2008), extending application of the multiallelic, multilocus spatial autocorrelation analysis methods of Smouse and Peakall (1999), Peakall et al. (2003) and Double et al. (2005). These new methods provide valuable insights into fine-scale genetic processes across a wide range of animals and plant”
- Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction (2014, methodology): “While this distance is implemented in the program GenoDive [32] and the R package polysat [33], there are a few caveats with these two implementations.”
- polysat: an R package for polyploid microsatellite analysis (2011, background): “When exporting to G ENO D IVE and SPA-G E D I formats, POLYSAT converts allele sizes from nucleotides to repeat number by dividing by the length of the microsatellite repeat motif (2 for dinucleotide repeats, 3 for trinucleotide repeats and so on) so that the user will have access to analyses within”
- mmod: an R library for the calculation of population differentiation statistics (2012, methodology): “These statistics are now widely used and can be calculated using several software packages (Meirmans & Van Tienderen 2004; Crawford 2010).”