Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae).

By M. A. Koch, B. Haubold, T. Mitchell-Olds. Molecular biology and evolution, 2000

973 citations recorded by the source corpus.

Subfields: Ecology, Evolution, Behavior and Systematics, Genetics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/2032857a7e3876927733d1191e1c97f3c2e281d1

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Citations in the corpus

Why are small seeds dispersed through animal guts: large numbers or seed size per se? (2006, methodology): “Sources used for phylogenetic supertree (Sanderson et al. 1998): the Angiosperm phylogeny of Davies et al. (2004) was used as a backbone; Eldena ¨s et al. (1999) and Bayer and Starr (1998) for Asteraceae, Olmstead et al. (2001) and Albach et al. (2004) for Lamiales, Zunk et al. (1999) and Koch et a”
Systematics and phylogeny of the Brassicaceae (Cruciferae): an overview (2006, neutral): “Prior to molecular studies, Arabis consisted of about 180 species (Al-Shehbaz 1988a, Rollins 1993), but beginning with the works of Koch et al. (1999a, 2000) and subsequently O’Kane and Al-Shehbaz (2003), this genus has been considerably reduced in size.”
Differential Expansion and Expression of α- and β-Tubulin Gene Families in Populus1[W][OA] (2007, background): “This duplication was dated between 6 and 10 million years ago (mya), based on synonymous substitution rates of 1.5 3 1028 and 9.1 3 1029 mutations per site per year for dicot genes by Koch et al. (2000) and Lynch and Conery (2000), respectively.”
Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids. (2007, background): “Approximately 15–43% of the transcriptome diverged in expression between A. thaliana and A. arenosa (split ~6 Mya).”
Evolution of Selfing: Recurrent Patterns in Molecular Adaptation (2015, background): “thaliana and other outcrossing Arabidopsis species occurred approximately 5 million years ago (Mya) (Koch et al. 2000), but recent data suggest that it could”
Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression. (2009, background): “The shared TEs must have been present in the common ancestor of the two species and thus inserted >5 Myr ago (Mya) (Koch et al. 2000).”
Chromosome triplication found across the tribe Brassiceae. (2005, methodology): “The outgroup choice was based on previous family-wide phylogenetic reconstructions (Koch et al. 2000, 2001, 2003b; Koch 2003).”
Contribution to ITS phylogeny of the Brassicaceae, with special reference to some Asian taxa (2009, methodology): “Finally, the position of Turritis L. within lineage I was established earlier ( Koch et al. 1999, 2000 ), and is closely related to the other tribal-rank clades within this lineage.”
Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. (2002, background): “By use of the dating strategy described by SanMiguel et al. (1998), but applying the synonymous substitution rate of 1.5 10 8 mutations per site per year determined for the Chs and Adh genes in the Brassicaceae (Koch et al. 2000), we estimated that these retrotransposons all inserted in the Arabidop”
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. (2003, background): “The separation between Arabidopsis and Brassica lineages is estimated to be between 12 and 20 Mya (Yang et al. 1999; Acarkan et al. 2000; Koch et al. 2000, 2001), which places the polyploidy event around 24–40 Mya, probably close to the emergence of the crucifers.”