ProteomeXchange provides globally co-ordinated proteomics data submission and dissemination

By Juan Antonio Vizcaíno, Eric W. Deutsch, Rui Wang, A. Csordas, F. Reisinger, D. Rios, José A. Dianes, Zhi Sun, T. Farrah, N. Bandeira and 15 more. Nature Biotechnology, 2014

2,649 citations recorded by the source corpus.

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Subfields: Molecular Biology, Spectroscopy

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Citations in the corpus

2016 update of the PRIDE database and its related tools (2015, methodology): “At present, apart from PRIDE, the resources PeptideAtlas (7), including its related resource PASSEL (PeptideAtlas SRM Experiment Library) (8), and MassIVE (Mass Spectrometry Interactive Virtual Environment, http://massive.ucsd.edu/) are the active members of the Consortium.”
DIA-Umpire: comprehensive computational framework for data independent acquisition proteomics (2015, methodology): “All mass spectrometry files ( Supplementary Table 11 ) along with DIA-Umpire results presented in this paper have been deposited to the ProteomeXchange Consortium 50 (http://proteomecentral.proteomexchange.org/) via the PRIDE partner repository with the data set identifier PXD001587.”
Accounting for the Multiple Natures of Missing Values in Label-Free Quantitative Proteomics Data Sets to Compare Imputation Strategies. (2016, methodology): “The complete MaxQuant output le is available on the repository of the ProteomeXchange Consortium [18], with the dataset identi er PXD000438.”
Deep Proteomics of the Xenopus laevis Egg using an mRNA-derived Reference Database (2014, positive): “The MS proteomics data have been deposited to the ProteomeXchange Consortium [51] via the PRIDE partner repository with the data set identifier PXD000926.”
Serum Albumin Domain Structures in Human Blood Serum by Mass Spectrometry and Computational Biology (2015, methodology): “The MS data have been deposited to the ProteomeXchangeConsortium via the PRIDE partner repository with the data set identifier PXD001692 (27).”
An improved protocol to study the plant cell wall proteome (2015, methodology): “The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium (Vizcaino et al., 2014) via the PRIDE partner repository with the dataset identifier PXD001927 and 10.6019/PXD001927.”
Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell‐lines (2015, background): “Of these, the largest repositories of primary, raw data are those that are organized in the ProteomeXchange consortium [8]: PRIDE [9], PeptideAtlas [10], MassIVE [11], and PASSEL [10].”
The composition of the gut microbiota shapes the colon mucus barrier (2014, neutral): “org) via the PRIDE partner repository [65] with the dataset identifier PXD001479.”