PRIMUS: a Windows PC-based system for small-angle scattering data analysis

By P. Konarev, V. Volkov, Anna Sokolova, M. Koch, Dmitri I. Svergun. 2003

2,881 citations recorded by the source corpus.

Subfields: Environmental Engineering, Nuclear and High Energy Physics, Statistical and Nonlinear Physics

View Paper: https://www.semanticscholar.org/paper/1450ffdca7e0b6120e45edc11e2ca43eabf6478c

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In Environmental Engineering

In Nuclear and High Energy Physics

In Statistical and Nonlinear Physics

Citations in the corpus

Computational design of trimeric influenza neutralizing proteins targeting the hemagglutinin receptor binding site (2017, methodology): “The radius of gyration (R G ) and I(0) for each frame were batch analyzed using autoRg, and frames with stable R G47 values were merged in primus 48 .”
Structural and biophysical properties of FopA, a major outer membrane protein of Francisella tularensis (2022, methodology): “MW of FopA was estimated by three programs: GNOM in ATSAS (41), BioXTAS RAW (42) and DENSS (43) and using two methods Porod volume (MWPorod) (44) and Volume of correlation (MWVcorr) (45) (Table 1).”
MODBASE: a database of annotated comparative protein structure models and associated resources (2005, methodology): “However, SAXS data are generally processed highly subjectively, often manually with the aid of the PRIMUS software package (66).”
ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions (2017, methodology): “The cross-platform implementation of the widely used PRIMUS for Windows (Konarev et al., 2003), named PRIMUS/qt, provides all the features of its predecessor and a number of additional functionalities.”
Accuracy of molecular mass determination of proteins in solution by small-angle X-ray scattering (2007, methodology): “The data were processed using standard procedures and normalized against concentration using the program package PRIMUS (Konarev et al., 2003).”
New developments in the ATSAS program package for small-angle scattering data analysis (2012, positive): “The new PRIMUS can load a (virtually) unlimited number of files, compared to the previous limitation of 12, and keeps a list of recently used files for quick access.”
Refined solution structure of the 82-kDa enzyme malate synthase G from joint NMR and synchrotron SAXS restraints (2008, methodology): “We took advantage of the high flux X-ray beam available at the Stanford Synchrotron Radiation Laboratory (SSRL), a third generation synchrotron source.”
LGP2 is a positive regulator of RIG-I– and MDA5-mediated antiviral responses (2010, methodology): “Data processing was performed using the program package PRIMUS (Konarev et al., 2003).”
Comprehensive phylogenetic analysis of the ribonucleotide reductase family reveals an ancestral clade (2022, positive): “Disordered and missing residues were modeled in AllosModFoXS ( Konarev et al., 2003 ; Manalastas-Cantos et al., 2021 ) with sampling of static structures consistent with the starting model.”
Structural insights into RNA recognition by RIG-I (2011, positive): “Radius of gyration (Rg) was estimated by using AutoRg (Konarev et al., 2003).”
Synthesis and characterization of chitosan–copper nanocomposites and their fungicidal activity against two sclerotia-forming plant pathogenic fungi (2017, methodology): “The scattering curves were corrected for the background scattering and primarily processed using standard procedures and program PRIMUS [18].”
BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis (2017, methodology): “Other common software for these operations are ScÅtter, Primus and the ATSAS utilities (Rambo, 2017; Konarev et al., 2003; Petoukhov et al., 2007, 2012; Franke et al., 2017).”