Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences.

By M. Miya, H. Takeshima, Hiromitsu Endo, Naoya B. Ishiguro, Jun Inoue, T. Mukai, Takashi P. Satoh, Motoomi Yamaguchi, A. Kawaguchi, K. Mabuchi and 2 more. Molecular Phylogenetics and Evolution, 2003

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Subfields: Aquatic Science, Nature and Landscape Conservation

View Paper: https://www.semanticscholar.org/paper/13bb4cb78c88e6a23bcbb2a7dfae8637e25982a3

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Citations in the corpus

New insights on early evolution of spiny-rayed fishes (Teleostei: Acanthomorpha) (2014, background): “When the RY coding was applied, the Myctophiformes appear as the sister taxon to Lampriformes with strong support (≥ 72% BSP or 84% BSP in average from six RY coding analyses from combined data set) (Figure 1B; Table 3), and together this group forms the sister group to a large group containing Poly”
Casting the Percomorph Net Widely: The Importance of Broad Taxonomic Sampling in the Search for the Placement of Serranid and Percid Fishes (2007, background): “Beginning with Miya et al. (2001), and continuing with Chen et al. (2003), Dettai and Lecointre (2004, 2005), Miya et al. (2003, 2005), and Smith and Wheeler (2004, 2006), molecular studies have begun to look broadly at the limits and relationships of the Percomorpha.”
Phylogenetic analysis of host–symbiont specificity and codivergence in bioluminescent symbioses (2007, methodology): “Sequence data for all species were either obtained in this laboratory (see Materials and methods and Appendix A) or were obtained from GenBank, using the data of Miya et al. (2003).”
Universal primer cocktails for fish DNA barcoding (2007, background): “In the event that taxon-specific primer mismatches are detected, decisions on the nucleotide composition of new primers will be aided by the very large number of complete mitochondrial genomes available for fishes (Inoue et al. 2001; Miya et al. 2001; Miya et al. 2003).”
MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline (2013, background): “Since then, the advantages of mitogenomic sequencing in evolutionary research has been demonstrated in many studies (e.g., Miya et al. 2003; Ramsden et al. 2003).”
Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi) (2011, background): “Development and use of the PCRbased rapid sequencing of the entire mitochondrial (mt) genomes for fishes addresses the problem of limitation in the number of sequence sites (Miya & Nishida, 1999, 2000; Saitoh et al., 2000, 2003, 2006; Inoue et al., 2001c, 2003, 2004; Ishiguro, Miya & Nishida, 2003; ”
Phylogenetic classification of bony fishes (2017, background): “This relationship is also supported by anatomical evidence [302], larval characters [303], and previous molecular studies [68, 304].”
Evolution of axial patterning in elongate fishes (2007, background): “The monophyly of Paracanthopterygii as a whole has been questioned (Miya et al., 2003).”
Teleost fish with specific genome duplication as unique models of vertebrate evolution (2010, background): “…times between lineages, which are indispensable for sound comparative evolutionary studies, are now available in teleosts (Inoue et al. 2003; Miya et al. 2003, 2005; Inoue et al. 2005; Lavoué et al. 2005; Kawahara et al. 2008; Lavoué et al. 2008; Setiamarga et al. 2008; Yamanoue et al.…”
Evolution of alternative sex-determining mechanisms in teleost fishes (2006, methodology): “…estimates of teleost phylogeny, based on extensive mtDNA sequences from dozens of taxonomically diverse species (Ishiguro, Miya & Nishida, 2003; Miya et al., 2003; Saitoh et al., 2003), as a phylogenetic backdrop for interpreting current distributions of alternative sexdetermination modes…”
The phylogenetic position of toadfishes (order Batrachoidiformes) in the higher ray-finned fish as inferred from partitioned Bayesian analysis of 102 whole mitochondrial genome sequences (2005, methodology): “Similarly, ambiguous relationships between two major lineages within the Paracanthopterygii (Polymixiiformes and Percopsiformes) in Miya et al. (2003) were fully resolved in the present analyses (Fig.”
Phylogeny of Gobioidei and Placement within Acanthomorpha, with a New Classification and Investigation of Diversification and Character Evolution (2009, methodology): “…japonicus [AP004429], Myripristis berndti [AP002940], Ostichthys japonicus [AP004431], Sargocentron rubrum [AP004432]) was obtained from GenBank (accession numbers for each sequence are given in parentheses), deposited from the studies of Miya et al. (2003, 2005) and Thacker and Hardman (2005).”
Primers and polymerase chain reaction conditions for DNA barcoding teleost fish based on the mitochondrial cytochrome b and nuclear rhodopsin genes (2007, background): “Teleosts account for > 95% of the estimated 30,000 fish species alive today (Miya et al. 2003; Nelson 2006).”
Resolution of ray-finned fish phylogeny and timing of diversification (2012, background): “The phylogeny confirms several results presented in previous molecular analyses, including the resolution of ophidiiforms (cusk eels) and batrachoidids (toadfish) as early diverging percomorphs (25, 26), a clade containing tetraodontiforms and lophiiforms (19, 24), a clade dominated by percomorphs w”
Recent Advances in the (Molecular) Phylogeny of Vertebrates (2003, background): “An impressive effort was made in a recent study to solve this question by sequencing and analyzing the complete mitochondrial sequence of 100 higher teleosts (Miya et al. 2003).”