OpenMS: a flexible open-source software platform for mass spectrometry data analysis
By Hannes L. Röst, Timo T. Sachsenberg, Stephan Aiche, C. Bielow, Hendrik Weisser, Fabian Aicheler, S. Andreotti, Hans-Christian Ehrlich, Petra Gutenbrunner, E. Kenar and 17 more. Nature Methods, 2016
599 citations recorded by the source corpus.
Subfields: Information Systems and Management, Molecular Biology, Spectroscopy
View Paper: https://www.semanticscholar.org/paper/0fbcfbe73373fdd09effd4600e0330ef6f8dd09f
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In Information Systems and Management
In Molecular Biology
- Jianguo Xia
- David S. Wishart
- Jasmine Chong
- Wanding Zhou
- Hui Shen
- Peter W. Laird
- Elaine R. Mardis
- Ilya Shmulevich
In Spectroscopy
- Jianguo Xia
- David S. Wishart
- Jasmine Chong
- Oliver Kohlbacher
- Christopher Sander
- Matthew Meyerson
- Li Ding
- Igor Sinelnikov
Citations in the corpus
- Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients (2018, methodology): “OpenMS (Kohlbacher et al., 2007; Röst et al., 2016) was used to identify polypeptides from a sample’s polypeptide database as follows: In order to allow to control for false discovery rates, decoy sequences were added to the database.”
- American Gut: an Open Platform for Citizen Science Microbiome Research (2018, unknown): “0 software (88) in order to 710 deconvolve and align each peak across different chromatograms (feature detection).”
- Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial (2018, unknown): “An algorithm for multi-run retention time alignment is TRIC (TRansfer of Identification Confidence), a component of the OpenSWATH workflow (Rost et al , 2016a).”
- Using MetaboAnalyst 5.0 for LC–HRMS spectra processing, multi-omics integration and covariate adjustment of global metabolomics data (2022, unknown): “Nonsignificant (4,339) Nonsignificant when adjusted (25)”
- Using MetaboAnalyst 4.0 for Comprehensive and Integrative Metabolomics Data Analysis (2019, methodology): “OpenMS: A flexible open-source software platform for mass spectrometry data analysis.”