SAGEmap: a public gene expression resource.
By A. Lash, C. Tolstoshev, L. Wagner, G. Schuler, R. Strausberg, G. Riggins, Stephen F. Altschul. Genome Research, 2000
437 citations recorded by the source corpus.
We have constructed a public gene expression data repository and online data access and analysis, WWW and FTP sites for serial analysis of gene expression (SAGE) data. The WWW and FTP components of this resource, SAGEmap, are located at http://www.ncbi.nlm.nih. gov/sage and ftp://ncbi.nlm.nih.gov/pub/sage, respectively. We herein describe SAGE data submission procedures, the construction and characteristics of SAGE tags to gene assignments, the derivation and use of a novel statistical test designed specifically for differential-type analyses of SAGE data, and the organization and use of this resource.
Subfields: Molecular Biology
View Paper: https://www.semanticscholar.org/paper/09a0f235f6504461e7f522d1f5aedc92b05fe30d
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In Molecular Biology
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Citations in the corpus
- Validation of oligoarrays for quantitative exploration of the transcriptome (2008, positive): “The tag-to-gene mapping was performed using the ACTG tool based on a SAGEmap data release with UniGene build 151 [ 37 ].”
- Genomic Analysis of Mouse Retinal Development (2004, background): “Since a single sequence tag can represent different genes and, conversely, an individual UniGene cluster can be represented by more than one tag, both ‘‘full’’ and ‘‘reliable’’ tag-to-UniGene mappings (Lash et al. 2000) have been created and can be selected by the user.”
- The human genome browser at UCSC. (2002, methodology): “The track incorporating SAGE data is the SAGE/UniGene track, which presents data indicating the transcriptional level of different UniGene clusters (http://www.ncbi.nlm.nih.gov/ UniGene/) from the SAGEMap project at the NCBI (Lal et al. 1999; Lash et al. 2000).”
- Database resources of the National Center for Biotechnology Information: update (2004, background): “SAGEmap is updated weekly, immediately following the update of UniGene and the data appear in the human genome Map Viewer as the SAGE track.”
- Database resources of the National Center for Biotechnology (2003, methodology): “SAGEmap is updated weekly, immediately following the update of UniGene and the data is reflected in the human genome Map Viewer as the SAGE track.”