RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble.

By Ye Ding, Chi Yu Chan, Charles E. Lawrence. RNA: A publication of the RNA Society, 2005

347 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/06cc0bdf3dbe142b53610196fbfb171e47e69bed

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Molecular Biology

1. Ivo L. Hofacker
2. Stephan H. Bernhart
3. Peter F. Stadler
4. Chi Yu Chan
5. Hakim Tafer
6. Ronny Lorenz
7. Ye Ding
8. Richard Neuböck

Citations in the corpus

• RNAstructure: software for RNA secondary structure prediction and analysis (2010, neutral): “representative structure, determined [16,17].”
• A structural analysis of in vitro catalytic activities of hammerhead ribozymes (2007, positive): “In comparison to the minimum free energy method, this approach has been shown to better represent the likely population of mRNA structures [34], and to make improved predictions for structural RNAs [ 35 ].”
• ViennaRNA Package 2.0 (2011, methodology): “When evaluating ensemble properties with the partition function, most programs now also compute the centroid structure [71], i.e., the structure with the smallest average base pair distance to all other structures in the ensemble.”
• The Vienna RNA Websuite (2008, background): “First, we list the centroid structure (10), i.”