Structure, variation, and assembly of the root-associated microbiomes of rice

By Joseph A. Edwards, Cameron Johnson, Christian Santos-Medellín, Eugene Lurie, Natraj Kumar Podishetty, Srijak Bhatnagar, Jonathan A. Eisen, Venkatesan Sundaresan. Proceedings of the National Academy of Sciences of the United States of America, 2015

2,403 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/019f4284bb2508954ca861b5fd9cbe8466930a1f

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Citations in the corpus

Combined amendment of immobilizers and the plant growth-promoting strain Burkholderia phytofirmans PsJN favours plant growth and reduces heavy metal uptake (2015, background): “Plant-associated microbiomes are mostly shaped by the soil environment, the plant genotype/physiology and environmental or agronomic conditions (Peiffer et al., 2013; Philippot et al., 2013; Edwards et al., 2015).”
Microbial interactions within the plant holobiont (2018, unknown): “Microbial association networks, built based on pairwise comparisons between abundance profiles of individual taxa, allow the identification of possible connections (either positive, neutral, or negative) among plant microbiota members [32, 41, 87, 209].”
Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming (2018, background): “Plants recruit a root microbiome in their early life stages from a larger pool of soil microbes [27, 52].”
Rhizosphere-associated bacterial network structure and spatial distribution differ significantly from bulk soil in wheat crop fields (2017, background): “The selection of the bacterial community in the rhizosphere involves molecular signals from the plant, including components of root exudates and possibly cell-wall or membrane proteins (Turner et al., 2013; Bulgarelli et al., 2015; Edwards et al., 2015).”
Simplified and representative bacterial community of maize roots (2017, background): “Subsequently, clear differences between the root microbiome and the microbiome of surrounding soils have also been reported in studies on wheat, tomato, cucumber, rice, barley, sugarcane, and eastern cottonwood by using culture-independent analyses (7, 9, 10, 33, 39, 40).”
Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation (2016, background): “We hypothesized that microbe–microbe interactions could contribute to the remaining variation and reasoned that the most important microbes and microbial relationships could be discovered by looking for “hubs”—highly connected microorganisms in scalefree correlation networks [22,42].”