Jakub Wiedemann

Molecular Biology · 2019–2020

A researcher in the Science corpus: 2 papers; trusts 1 researcher and is trusted by 0 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 44 citations into it

Whom Jakub Wiedemann trusts

Their strongest outbound trust, strongest first, inferred from their citations.

1. Rhiju Das (in Molecular Biology)

Papers from Jakub Wiedemann's perspective

Ordered by how strongly the researchers Jakub Wiedemann trusts endorse each paper. Same corpus, a different order for every researcher.

1. ModeRNA: a tool for comparative modeling of RNA 3D structure
2. The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
3. Geometric nomenclature and classification of RNA base pairs.
4. New metrics for comparing and assessing discrepancies between RNA 3D structures and models.
5. Basic local alignment search tool.
6. Quantitative analysis of nucleic acid three-dimensional structures.
7. Automated 3D structure composition for large RNAs
8. Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms.
9. A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs (Nature Methods)
10. Biopython: freely available Python tools for computational molecular biology and bioinformatics

Their papers

• RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools (2019) — 76 citations
• RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers (2020) — 141 citations