James S. Song
Molecular Biology · 2003–2022
A researcher in the Science corpus: 12 papers; trusts 4 researchers and is trusted by 1 researcher here, as inferred from the citation graph.
Subfields
- Molecular Biology — 85 citations into it; #16,289 of 17,773 by trust here, #2,628 by citations
Whom James S. Song trusts
Their strongest outbound trust, strongest first, inferred from their citations.
- Stephen H. Bryant (in Molecular Biology)
- Aron Marchler-Bauer (in Molecular Biology)
- Sean R. Eddy (in Molecular Biology)
- Lewis Y. Geer (in Molecular Biology)
Who trusts James S. Song
- Kuo-Chen Chou (in Molecular Biology)
Papers from James S. Song's perspective
Ordered by how strongly the researchers James S. Song trusts endorse each paper. Same corpus, a different order for every researcher.
- SMART 5: domains in the context of genomes and networks (Nucleic Acids Res.)
- Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements.
- Data growth and its impact on the SCOP database: new developments
- InterPro in 2017—beyond protein family and domain annotations
- The Pfam protein families database: towards a more sustainable future
- Pfam: clans, web tools and services
- TIGRFAMs: a protein family resource for the functional identification of proteins (Nucleic Acids Res.)
- TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes (Nucleic Acids Res.)
- SMART 7: recent updates to the protein domain annotation resource
- The COG database: an updated version includes eukaryotes
Their papers
- CDD: a Conserved Domain Database for the functional annotation of proteins (2010) — 3,210 citations
- CDD: NCBI's conserved domain database (2014) — 3,290 citations
- RefSeq: an update on prokaryotic genome annotation and curation (2017) — 880 citations
- CDD/SPARCLE: the conserved domain database in 2020 (2019) — 2,377 citations
- CDD/SPARCLE: functional classification of proteins via subfamily domain architectures (2016) — 2,488 citations
- CDD: a Conserved Domain Database for protein classification (2004) — 1,208 citations
- CDD: a curated Entrez database of conserved domain alignments (2003) — 788 citations
- CDD: specific functional annotation with the Conserved Domain Database (2008) — 1,156 citations
- CDD: a conserved domain database for interactive domain family analysis (2006) — 901 citations
- RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation (2020) — 960 citations
- CDD: conserved domains and protein three-dimensional structure (2012) — 883 citations
- The conserved domain database in 2023 (2022) — 1,008 citations