Aroop Sircar
Molecular Biology · 2009–2011
A researcher in the Science corpus: 4 papers; trusts 19 researchers and is trusted by 18 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 58 citations into it; #1,948 of 17,773 by trust here, #6,746 by citations
- Materials Chemistry — 37 citations into it
- Computational Biology & Bioinformatics — 19 citations into it
- Radiology, Nuclear Medicine and Imaging — 15 citations into it; #316 of 3,265 by trust here, #814 by citations
- Computational Theory and Mathematics — 11 citations into it
Whom Aroop Sircar trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- David Baker
- Chu Wang
- Jeffrey J. Gray
- Brian Kuhlman
- Stephen F. Altschul
- O. Schueler‐Furman
- Rhiju Das
- Adrian A. Canutescu
- K. Simons
- Carol A. Rohl
Who trusts Aroop Sircar overall
- Jeffrey J. Gray
- Brian G. Pierce
- Konrad Krawczyk
- Jeffrey A. Ruffolo
- Brian D. Weitzner
- Jiye Shi
- K. Sanni
- Sidhartha Chaudhury
- Paolo Marcatili
- R. L. Kelly
Papers from Aroop Sircar's perspective
Ordered by how strongly the researchers Aroop Sircar trusts endorse each paper. Same corpus, a different order for every researcher.
- Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions.
- Macromolecular modeling with rosetta.
- Effective energy function for proteins in solution
- CAPRI: A Critical Assessment of PRedicted Interactions (Proteins: Structure, Function, and Bioinformatics)
- Basic local alignment search tool.
- A program to produce both detailed and schematic plots of protein structures
- The Protein Data Bank.
- Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. (Journal of Molecular Biology)
- Rosetta in CASP4: Progress in ab initio protein structure prediction (Proteins: Structure, Function, and Bioinformatics)
- Cyclic coordinate descent: A robotics algorithm for protein loop closure
Their papers
- Toward high-resolution homology modeling of antibody Fv regions and application to antibody-antigen docking (2009) — 189 citations
- SnugDock: Paratope Structural Optimization during Antibody-Antigen Docking Compensates for Errors in Antibody Homology Models (2010) — 179 citations
- RosettaAntibody: antibody variable region homology modeling server (2009) — 160 citations
- Analysis and Modeling of the Variable Region of Camelid Single Domain Antibodies (2011) — 92 citations