Douglas E. V. Pires
Molecular Biology · 2013–2022
A researcher in the Science corpus: 8 papers; trusts 30 researchers and is trusted by 14 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 117 citations into it; #3,015 of 17,773 by trust here, #6,817 by citations
- Materials Chemistry — 62 citations into it; #3,267 of 11,513 by trust here, #7,401 by citations
- Computational Biology & Bioinformatics — 34 citations into it
- Computational Theory and Mathematics — 32 citations into it; #5,037 of 12,182 by trust here, #2,351 by citations
- Spectroscopy — 21 citations into it
- Genetics — 7 citations into it
Whom Douglas E. V. Pires trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Yves Dehouck
- David B. Ascher
- Emidio Capriotti
- Tom L. Blundell
- Pauline Crystal Ng
- Andrej Sali
- Carlos H. M. Rodrigues
- Jianlin Cheng
- Shuichi Kawashima
- Alexey G. Murzin
Who trusts Douglas E. V. Pires overall
- Carlos H. M. Rodrigues
- David B. Ascher
- Kevin Kaichuang Yang
- Qisheng Pan
- Arun Prasad Pandurangan
- Zachary Wu
- Yoochan Myung
- Antoine Daina
- Bian Li
- Thanh-Binh Nguyen
Papers from Douglas E. V. Pires's perspective
Ordered by how strongly the researchers Douglas E. V. Pires trusts endorse each paper. Same corpus, a different order for every researcher.
- The Protein Data Bank.
- Highly accurate protein structure prediction with AlphaFold
- The Protein Data Bank
- TM-align: a protein structure alignment algorithm based on the TM-score
- ProTherm, version 4.0: thermodynamic database for proteins and mutants
- Improved protein structure prediction using potentials from deep learning
- Open Babel: An open chemical toolbox
- SCOP: a structural classification of proteins database for the investigation of sequences and structures.
- Improved protein structure prediction using predicted interresidue orientations
- Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features
Their papers
- mCSM: predicting the effects of mutations in proteins using graph-based signatures (2013) — 1,016 citations
- DUET: a server for predicting effects of mutations on protein stability using an integrated computational approach (2014) — 867 citations
- DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability (2018) — 926 citations
- A structural biology community assessment of AlphaFold2 applications (2021) — 578 citations
- pkCSM: Predicting Small-Molecule Pharmacokinetic and Toxicity Properties Using Graph-Based Signatures (2015) — 4,911 citations
- DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations (2020) — 556 citations
- Systematic evaluation of computational tools to predict the effects of mutations on protein stability in the absence of experimental structures (2022) — 22 citations
- mCSM-PPI2: predicting the effects of mutations on protein–protein interactions (2019) — 309 citations