Joshua Orvis

Nature · 2006–2021

A researcher in the Science corpus: 10 papers; trusts 0 researchers and is trusted by 0 researchers here, as inferred from the citation graph.

Papers from Joshua Orvis's perspective

Ordered by how strongly the researchers Joshua Orvis trusts endorse each paper. Same corpus, a different order for every researcher.

1. BLAT--the BLAST-like alignment tool. (Genome Research)
2. The generic genome browser: a building block for a model organism system database. (Genome Research)
3. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. (Genome Research)
4. TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders (Bioinform.)
5. GENCODE: producing a reference annotation for ENCODE (Genome Biology)
6. EGASP: the human ENCODE Genome Annotation Assessment Project (Genome Biology)
7. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome (Genome Biology)
8. GMAP: a genomic mapping and alignment program for mRNA and EST sequence (Bioinform.)
9. GeneWise and Genomewise. (Genome Research)
10. Apollo: a sequence annotation editor (Genome Biology)

Their papers

• A framework for human microbiome research (2012) — 2,418 citations
• Structure, Function and Diversity of the Healthy Human Microbiome (2012) — 10,771 citations
• Strains, functions, and dynamics in the expanded Human Microbiome Project (2017) — 1,132 citations
• A Catalog of Reference Genomes from the Human Microbiome (2010) — 715 citations
• De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity (2013) — 7,396 citations
• The TIGR Rice Genome Annotation Resource: improvements and new features (2006) — 1,209 citations
• Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments (2007) — 3,430 citations
• Comparative cellular analysis of motor cortex in human, marmoset and mouse (2021) — 639 citations
• De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity (2013) — 348 citations
• The Staphylococcus aureus NCTC 8325 Genome (2006) — 91 citations