Shaun Mahony
Molecular Biology · 2007–2021
A researcher in the Science corpus: 4 papers; trusts 25 researchers and is trusted by 0 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 81 citations into it
- Artificial Intelligence — 13 citations into it
Whom Shaun Mahony trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Timothy L. Bailey
- Shmuel Pietrokovski
- Ting Wang
- Giulio Pavesi
- J. Hughes
- X. S. Liu
- Charles Peter Elkan
- Gavin E. Crooks
- P. Park
- Gert Thijs
Who trusts Shaun Mahony overall
Papers from Shaun Mahony's perspective
Ordered by how strongly the researchers Shaun Mahony trusts endorse each paper. Same corpus, a different order for every researcher.
- BioProspector: Discovering Conserved DNA Motifs in Upstream Regulatory Regions of Co-Expressed Genes (Pacific Symposium on Biocomputing)
- Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. (Journal of Molecular Biology)
- Searching databases of conserved sequence regions by aligning protein multiple-alignments.
- Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer
- Maximum likelihood from incomplete data via the EM - algorithm plus discussions on the paper
- An algorithm for finding signals of unknown length in DNA sequences (Intelligent Systems in Molecular Biology)
- Genome-wide identification of in vivo protein–DNA binding sites from ChIP-Seq data (Nucleic Acids Research)
- ChIP-seq accurately predicts tissue-specific activity of enhancers (Nature)
- An improved map of conserved regulatory sites for Saccharomyces cerevisiae (BMC Bioinformatics)
- Basic local alignment search tool.
Their papers
- Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences (2007) — 750 citations
- STAMP: a web tool for exploring DNA-binding motif similarities (2007) — 509 citations
- An interpretable bimodal neural network characterizes the sequence and preexisting chromatin predictors of induced transcription factor binding (2021) — 23 citations
- High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints (2012) — 304 citations