Amrita Pati
Molecular Biology · 2009–2017
A researcher in the Science corpus: 10 papers; trusts 1 researcher and is trusted by 0 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 133 citations into it
Whom Amrita Pati trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Who trusts Amrita Pati overall
Papers from Amrita Pati's perspective
Ordered by how strongly the researchers Amrita Pati trusts endorse each paper. Same corpus, a different order for every researcher.
- Basic local alignment search tool.
- The Pfam protein families database
- Accelerated Profile HMM Searches
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
- A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea (Nature)
- IMG: the integrated microbial genomes database and comparative analysis system (Nucleic Acids Res.)
- Fast gapped-read alignment with Bowtie 2
- CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats (BMC Bioinformatics)
- The COG database: an updated version includes eukaryotes
- A new generation of homology search tools based on probabilistic inference.
Their papers
- A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea (2009) — 1,012 citations
- IMG 4 version of the integrated microbial genomes comparative analysis system (2013) — 577 citations
- A Catalog of Reference Genomes from the Human Microbiome (2010) — 715 citations
- 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life (2017) — 243 citations
- IMG/M 4 version of the integrated metagenome comparative analysis system (2013) — 274 citations
- Microbial species delineation using whole genome sequences (2015) — 666 citations
- Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters. (2014) — 897 citations
- GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes (2010) — 520 citations
- Minimum Information about a Biosynthetic Gene cluster (2015) — 802 citations
- The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4) (2015) — 308 citations