Travis J. Wheeler
Molecular Biology · 2012–2021
A researcher in the Science corpus: 8 papers; trusts 9 researchers and is trusted by 10 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 99 citations into it; #4,510 of 17,773 by trust here, #5,864 by citations
- Computational Biology & Bioinformatics — 27 citations into it
- Plant Science — 22 citations into it
- Spectroscopy — 19 citations into it
- Artificial Intelligence — 7 citations into it
Whom Travis J. Wheeler trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Sean R. Eddy
- Michael Farrar
- Eric P. Nawrocki
- Anders Krogh
- Robert D. Finn
- Steven Henikoff
- Richard Durbin
- Paul P. Gardner
- Kevin J. Karplus
- Diana L. Kolbe
Who trusts Travis J. Wheeler overall
- Liisa Holm
- Robin Pearce
- Robert M. Hubley
- Robert D. Finn
- Weidong Bao
- Nathan T. Evans
- Jody Clements
- Jullien M. Flynn
- Laura M. Laakso
- Gilbert S. Omenn
Papers from Travis J. Wheeler's perspective
Ordered by how strongly the researchers Travis J. Wheeler trusts endorse each paper. Same corpus, a different order for every researcher.
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
- Hidden Markov models in computational biology. Applications to protein modeling.
- Hidden Markov model speed heuristic and iterative HMM search procedure
- The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data
- Automated de novo identification of repeat sequence families in sequenced genomes. (Genome Research)
- Infernal 1.0: inference of RNA alignments (Bioinform.)
- PIRSF: family classification system at the Protein Information Resource
- CATH: comprehensive structural and functional annotations for genome sequences
- Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods.
Their papers
- nhmmer: DNA homology search with profile HMMs (2013) — 795 citations
- HMMER web server: 2015 update (2015) — 1,607 citations
- Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models (2014) — 348 citations
- Dfam: a database of repetitive DNA based on profile hidden Markov models (2012) — 297 citations
- The Dfam community resource of transposable element families, sequence models, and genome annotations (2020) — 610 citations
- The Dfam database of repetitive DNA families (2015) — 664 citations
- From telomere to telomere: the transcriptional and epigenetic state of human repeat elements (2021) — 189 citations
- 15 years of PhosphoSitePlus®: integrating post-translationally modified sites, disease variants and isoforms (2018) — 299 citations