James K. Bonfield
Genetics · 2000–2021
A researcher in the Science corpus: 8 papers; trusts 1 researcher and is trusted by 4 researchers here, as inferred from the citation graph.
Subfields
- Genetics — 35 citations into it
Whom James K. Bonfield trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Who trusts James K. Bonfield overall
- Wouter De Coster
- Jakob Skou Pedersen
- Alaina Shumate
- Emidio Capriotti
- Eric S. Lander
- Rosa Rademakers
- Gill Bejerano
- M. Immordino‐Yang
- A. Alyass
Papers from James K. Bonfield's perspective
Ordered by how strongly the researchers James K. Bonfield trusts endorse each paper. Same corpus, a different order for every researcher.
- The Sequence Alignment/Map format and SAMtools (Bioinform.)
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data (Bioinform.)
- The Ensembl Variant Effect Predictor
- Bioconda: sustainable and comprehensive software distribution for the life sciences (Nature Methods)
- AddressSanitizer: A Fast Address Sanity Checker
- BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data (Bioinform.)
- Improving SNP discovery by base alignment quality (Bioinform.)
- JBrowse: a dynamic web platform for genome visualization and analysis (Genome Biology)
- The human genome browser at UCSC.
Their papers
- Finishing the euchromatic sequence of the human genome (2004) — 3,133 citations
- Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution (2004) — 2,677 citations
- Twelve years of SAMtools and BCFtools (2020) — 12,495 citations
- HTSlib: C library for reading/writing high-throughput sequencing data (2021) — 332 citations
- The Staden package, 1998. (2000) — 1,154 citations
- Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study (2021) — 720 citations
- Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (2021) — 1,098 citations
- SARS-CoV-2 evolution during treatment of chronic infection (2021) — 955 citations