Patricia C. Babbitt

Molecular Biology · 2003–2019

A researcher in the Science corpus: 8 papers; trusts 7 researchers and is trusted by 1 researcher here, as inferred from the citation graph.

Subfields

• Molecular Biology — 160 citations into it; #17,461 of 17,773 by trust here, #3,275 by citations
• Computational Biology & Bioinformatics — 40 citations into it
• Genetics — 18 citations into it
• Materials Chemistry — 17 citations into it
• Ecology — 5 citations into it

Whom Patricia C. Babbitt trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Robert C. Edgar
2. Robert D. Finn
3. Stephen F. Altschul
4. The UniProt Consortium

Who trusts Patricia C. Babbitt overall

1. J. Gerlt

Papers from Patricia C. Babbitt's perspective

Ordered by how strongly the researchers Patricia C. Babbitt trusts endorse each paper. Same corpus, a different order for every researcher.

1. The Pfam protein families database
2. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
3. The Protein Data Bank.
4. The ProDom database of protein domain families: more emphasis on 3D (Nucleic Acids Res.)
5. PIRSF: family classification system at the Protein Information Resource
6. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
7. SIFTS: Structure Integration with Function, Taxonomy and Sequences resource
8. New and continuing developments at PROSITE (Nucleic Acids Res.)
9. The InterPro protein families database: the classification resource after 15 years
10. Data growth and its impact on the SCOP database: new developments

Their papers

• A large-scale evaluation of computational protein function prediction (2013) — 1,002 citations
• InterPro in 2017—beyond protein family and domain annotations (2016) — 1,390 citations
• InterPro in 2019: improving coverage, classification and access to protein sequence annotations (2018) — 1,309 citations
• Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies (2009) — 736 citations
• The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens (2019) — 434 citations
• Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies (2009) — 438 citations
• Large-Scale Determination of Sequence, Structure, and Function Relationships in Cytosolic Glutathione Transferases across the Biosphere (2014) — 96 citations
• Evolutionary Potential of (β/α)8-Barrels: Functional Promiscuity Produced by Single Substitutions in the Enolase Superfamily† (2003) — 162 citations