Runze Dong

Molecular Biology · 2018–2020

A researcher in the Science corpus: 2 papers; trusts 4 researchers and is trusted by 1 researcher here, as inferred from the citation graph.

Subfields

• Molecular Biology — 23 citations into it; #14,914 of 17,773 by trust here, #13,284 by citations
• Materials Chemistry — 15 citations into it; #9,397 of 11,513 by trust here, #10,845 by citations
• Computational Biology & Bioinformatics — 12 citations into it

Whom Runze Dong trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Liisa Holm
2. Ilya N. Shindyalov
3. Yang Zhang
4. Naomi Fox
5. Matthew Menke
6. Päivi Rosenström
7. Jeffrey Skolnick
8. Stephen F. Altschul
9. Christopher Sander
10. Philip E. Bourne

Who trusts Runze Dong overall

1. Liisa Holm
2. Zongyang Du

Papers from Runze Dong's perspective

Ordered by how strongly the researchers Runze Dong trusts endorse each paper. Same corpus, a different order for every researcher.

1. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path.
2. Protein structure comparison by alignment of distance matrices.
3. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
4. Dali server: conservation mapping in 3D
5. TM-align: a protein structure alignment algorithm based on the TM-score
6. SCOP: a structural classification of proteins database for the investigation of sequences and structures.
7. Searching protein structure databases with DaliLite v.3 (Bioinform.)
8. SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures
9. PDP: protein domain parser
10. Matt: Local Flexibility Aids Protein Multiple Structure Alignment

Their papers

• mTM-align: a server for fast protein structure database search and multiple protein structure alignment (2018) — 85 citations
• Design of proteins presenting discontinuous functional sites using deep learning (2020) — 40 citations