An updated megaphylogeny of plants, a tool for generating plant phylogenies, and an analysis of phylogenetic community structure

By Hong Qian, Yilan Jin. 2016

478 citations recorded by the source corpus.

Subfields: Ecology, Evolution, Behavior and Systematics, Plant Science

View Paper: https://www.semanticscholar.org/paper/fc49351992158f0076ea99ce77ca83a4034bf9a1

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Ecology, Evolution, Behavior and Systematics

1. Peter B. Reich
2. J. H. C. Cornelissen
3. C. Violle
4. Yi Jin
5. C. Roumet
6. G. T. Freschet
7. S. Hobbie
8. Hong Qian

In Plant Science

1. Peter B. Reich
2. C. Roumet
3. Leho Tedersoo
4. G. T. Freschet
5. Yi Jin
6. M. Tjoelker
7. M. Bahram
8. L. Comas

Citations in the corpus

• Climate, soil and plant functional types as drivers of global fine‐root trait variation (2017, methodology): “We used S.PhyloMaker (Qian & Jin 2015) to generate a phylogeny containing species from the Rhizopolis database from this megaphylogeny.”
• V.PhyloMaker2: An updated and enlarged R package that can generate very large phylogenies for vascular plants (2022, methodology): “…function makes phylogenetic hypotheses under three scenarios (i.e. S1, S2 and S3), which are the same three scenarios as in S.PhyloMaker (Qian and Jin, 2016) and V.PhyloMaker (Jin and Qian, 2019),where details about the three scenarios are available (also see the “ Descriptions of…”
• High-level classification of the Fungi and a tool for evolutionary ecological analyses (2018, methodology): “PhyloMaker (Qian and Jin 2016) packages of R using the perl script taxonomy_to_tree.”
• Factors Influencing Leaf Chlorophyll Content in Natural Forests at the Biome Scale (2018, unknown): “Phylo Maker (Qian and Jin, 2016), and generated the phylogenetic tree in the MAGA 5.”
• Evolutionary history of the flora of Mexico: Dry forests cradles and museums of endemism (2018, methodology): “To estimate phylogenetic diversity andweighted phylogenetic endemism, we constructed a phylogenetic tree for the vascular plant species utilizing the mega-phylogeny PhytoPhylo from S.PhyloMaker (Qian & Jin, 2016).”
• Global database of plants with root‐symbiotic nitrogen fixation: NodDB (2018, methodology): “These observations, together with its phylogenetic position at the base of Myricaceae, suggest that Myricaceae and Alnus evolved actinorhizal associations later (Eocene) than Casuarinaceae (Paleocene; Larson- Johnson, 2015; Magallón, Gómez- Acevedo, Sánchez- Reyes, & Hernández- Hernández, 2015; Qian”