Associations between species and groups of sites: indices and statistical inference.

By M. de Cáceres, Pierre Legendre. Ecology, 2009

3,620 citations recorded by the source corpus.

Subfields: Ecological Modeling, Ecology, Nature and Landscape Conservation

View Paper: https://www.semanticscholar.org/paper/fbea2d0e92f8b4eff34f9c9511a6bf3523217bb8

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In Ecological Modeling

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In Nature and Landscape Conservation

Citations in the corpus

Using species combinations in indicator value analyses (2012, methodology): “…data Apa ¼ npn Agpa ¼ np=NpXK k¼1 nk=Nk Positive predictive value for abundance data Aind ¼ apa Agind ¼ ap=NpXK k¼1 ak=NkSensitivity B ¼ npNp Notation is as in De Cáceres & Legendre (2009): Np, number of sites that belong to the target site group; n, number of occurrences of the indicator across…”
How do ecologists select and use indicator species to monitor ecological change? Insights from 14 years of publication in Ecological Indicators (2016, positive): “…of metrics evaluating the performance of IS (e.g. 275 Dufrêne and Legendre (1997)), inclusion of additional (or multi-) metrics (e.g. detection ability, 276 variability, demographic stability) should be applied regularly (De Cáceres and Legendre 2009; 277 Quinn et al. 2011, Urban et al. 2012).”
Combined amendment of immobilizers and the plant growth-promoting strain Burkholderia phytofirmans PsJN favours plant growth and reduces heavy metal uptake (2015, methodology): “Indicator species analysis was calculated using the indicspecies R package (De C aceres and Legendre, 2009), with the aim of identifying taxa summarized at genus level associated with the Falkone rather than the Fuxxol cultivar or with one particular treatment (or treatments).”
Improving indicator species analysis by combining groups of sites (2010, methodology): “(4) More indicator species will be found than expected by chance when the classifi cation of sites has been obtained from the species composition itself (De Cáceres and Legendre 2009).”
Using tree species inventories to map biomes and assess their climatic overlaps in lowland tropical South America (2018, methodology): “Indicator species analyses were conducted using functions in the indicspecies package for the R Statistical Software (De Cáceres & Legendre, 2009).”
Distinct soil microbial diversity under long-term organic and conventional farming (2014, methodology): “…R) of each OTU with a particular farming system or farming system combination was determined using correlation-based indicator species analysis (De Cáceres and Legendre, 2009) with all possible combinations (De Cáceres et al., 2010) and correction for unequal sample sizes where necessary (Tichy…”
Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance (2017, neutral): “7.6 De Cáceres and Legendre, 2009 https://cran.r-project.org/web/packages/ indicspecies/index.html R Package: RColorBrewer: ColorBrewer Palettes Neuwirth, 2014 http://cran.r-project.org/package= rccolorbrewer KING v1.”
Saproxylic beetles as indicator species for dead-wood amount and temperature in European beech forests (2012, positive): “We used indicator species analysis (Dufrêne and Legendre, 1997) and extended the method with combinations of site groups according to De Caceres and Legendre (2009). The original method considers single associations between species and site groups, whereas the extended method considers all possible ”