Revealing cryptic spatial patterns in genetic variability by a new multivariate method
By Thibaut Jombart, Sébastien Devillard, A. Dufour, D. Pontier. Heredity, 2008
595 citations recorded by the source corpus.
Subfields: Genetics
View Paper: https://www.semanticscholar.org/paper/f69b9b8c3fad4654f972220e1b78acda4679349a
How researchers see this paper
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In Genetics
- Sébastien J. Puechmaille
- Jon E. Swenson
- H. Wagner
- E. Bellemain
- P. Taberlet
- Marie-Josée Fortin
- A. Dufour
- Pierre Legendre
Citations in the corpus
- Community ecology in the age of multivariate multiscale spatial analysis (2012, methodology): “These MEMs were then divided in two groups corresponding to broad scales (9 MEMs associated with a positive Moran’s statistic) and fine scales (4 MEMs associated with a negative autocorrelation).”
- The program structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem (2016, methodology): “…analysis such as principal component analysis (PCA) or discriminant analysis of principal components (DAPC) has recently been successfully used to characterize population structure and identify the number of clusters (Jombart 2008; Jombart et al. 2008, 2009, 2010; Lee et al. 2009; Odong 2013).”
- Circuit Theory and Model-Based Inference for Landscape Connectivity (2013, unknown): “Their analysis, based on spatial principal component analysis (Jombart et al. 2008), concludes that gene flow in chamois may be impeded by lower elevation terrain (e.g., mountain valleys), possibly due to the increased risk of predation.”
- Discriminant analysis of principal components: a new method for the analysis of genetically structured populations (2010, unknown): “Multivariate analyses have been used for decades to extract various types of information from genetic data and have attracted renewed interest in the field [6-12].”
- Genetics and conservation of European brown bears Ursus arctos (2011, background): “…for assessing population structure without any a priori information about the limits of the populations (Francois et al. 2006, Manel et al. 2007, Jombart et al. 2008), identifying the geographical location of genetic discontinuities, and determining whether an individual is a resident or a…”