BBMap: A Fast, Accurate, Splice-Aware Aligner

By Brian Bushnell. 2014

2,084 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/f64dd54444a724574deb7710888091350eebb2b9

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

1. Botond Sipos
2. Liuyang Zhao
3. Yong Zhang
4. Jia Ye
5. Xiuqing Zhang
6. Qiang Chen
7. L. Fang
8. Wei Shen

Citations in the corpus

• SeqKit2: A Swiss army knife for sequence and alignment processing (2024, methodology): “Some existing utilities, including Bioawk [1], Seqtk [2], BBMaps [3], and SeqKit [4], are widely used by bioinformatic researchers and have wide popularity for years at online question ‐ and ‐ answer platforms, such as BioStar [5].”
• SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data (2017, methodology): “We chose other workflow-like tools capable of performing these functions, which are Trimmomatic (Trimmomatic, RRID:SCR 011848) [27], AfterQC [30], BBDuk [31], and AlignTrimmer [36].”