Stochastic simulations of DNA in flow: Dynamics and the effects of hydrodynamic interactions

By R. Jendrejack, J. Pablo, Michael D. Graham. 2002

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Particle dynamics modeling methods for colloid suspensions (2014, background): “red blood cells and platelets in blood [43,84,148,177], microorganisms in biological suspensions [61], proteins and nucleic acids in aqueous environments [108], drug encapsulation and delivery [157]) as well as their applications in nanotechnology and nanomanufacturing processes (e.”
On the coarse-graining of polymers into bead-spring chains (2004, methodology): “The technique of Brownian dynamics (BD) [24,25] has een widely used to study the non-equilibrium and e ibrium properties of polymer models in flow, in particu ead-rod and bead-spring models [19,26,27] .”
Chaotic mixing in three-dimensional microvascular networks fabricated by direct-write assembly (2003, background): “This is of particular concern for mixing fluids that contain biological (for example, DNA or proteins) or other large molecules, because these species diffuse slowl”
MICRO-MACRO METHODS FOR THE MULTISCALE SIMULATION OF VISCOELASTIC FLOW USING MOLECULAR MODELS OF KINETIC THEORY (2004, background): “Liu [9], Rallison [10], Doyle et al [11], Sizaire et al [12], Larson et al [13], Li et al [14], Somasi et al [15], Jendrejack et al [ 16 ], Hsieh et al [17]).”