The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deu

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Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA (2006, methodology): “…genome evolution (Boore et al. 2005), cytonuclear coevolution (Burger et al. 2003, Rand et al. 2004), mechanisms of gene order rearrangement (Boore 2000), the use of mtDNA in phylogeographic/specieslevel studies (Funk & Omland 2003), and the population biology of mtDNA (Ballard & Rand 2005).”
Automatic annotation of organellar genomes with DOGMA (2004, methodology): “(2002) for plastid genes and used by Boore (2000) for mitochondrial genes.”
Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species (2008, background): “Gene order changes can also originate from processes strictly related to replication, such as tandem duplications of genomic segments due to slipped-strand mispairing or imprecise termination of replication (Boore, 2000).”