Stable isotope probing — linking microbial identity to function

By M. Dumont, J. Murrell. Nature Reviews Microbiology, 2005

610 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/f101918f0ae1b47d473d6ef22c29739aabfcd76d

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Citations in the corpus

Life in Dry Soils: Effects of Drought on Soil Microbial Communities and Processes (2018, methodology): “…reliable tool for assessing community response is stable isotope probing that analyzes only DNA from organisms that have incorporated a tracer—if that tracer is applied during rewetting, the method can reliably analyze populations that have replicated following rewetting (Dumont & Murrell 2005).”
Metagenomics: DNA sequencing of environmental samples (2005, methodology): “STABLE ISOTOPE PROBING (SIP) holds promise as a means to obtain DNA from organisms that can metabolize a particular substrate, and might be a valuable method for community fractionatio”
Culture-independent molecular tools for soil and rhizosphere microbiology (2013, methodology): “SIP -High sensitivity -Provides evidence on the function of microorganisms in a controlled experimental setup -Incubation and cycling of the stable isotope might cause biases within the microbial communities [64]”
Resource Exchange in the Rhizosphere: Molecular Tools and the Microbial Perspective (2006, background): “…by equilibrium density centrifugation (Meselson & Stahl 1958); this 13C-labeled subpool provides genes to identify organisms that used the labeled substrate (Dumont & Murrell 2005; Lu & Conrad 2005; Radajewski et al. 2000, 2003; Saleh-Lakha et al. 2005; Singh et al. 2004; Wellington et al. 2003).”
Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment. (2008, background): “DNA-SIP has been used to demonstrate CO 2 incorporation by nitrifiers in estuarine sediments, but no information was sought on archaea (Freitag et al., 2006).”
Soil Microbial Community Analysis Using Denaturing Gradient Gel Electrophoresis (2007, methodology): “Stable isotope probing (SIP) is a promising method that enables phylogenetic identifi cation of communities responsible for utilization of a substrate (Dumont and Murrell, 2005; Radajewski et al., 2000).”
Culture-independent molecular techniques for soil microbial ecology (2010, background): “More tangible evidence has been obtained when isotopically-labelled substrates are traced to a particular group (Dumont and Murrell, 2005).”