Faculty Opinions recommendation of The locus of evolution: evo devo and the genetics of adaptation.

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The Molecular Basis of Phenotypic Convergence (2014, background): “For example, the independent evolution of similar phenotypes can be identified from ancestral state reconstruction, comparisons of phylogenetic and genetic distance, or inferred shared selective regime (e.g., Muschick et al. 2012, Ingram & Mahler 2013).”
Evo‐Devo and an Expanding Evolutionary Synthesis (2008, unknown): “These include instances where the gain or loss of binding sites for highly conserved transcription factors has altered CRE function and target gene regulation (Gompel et al., 2005, Jeong et al., 2006).”