Dynamical networks in tRNA:protein complexes
By Anurag Sethi, John Eargle, Alexis A Black, Zaida Luthey-Schulten. Proceedings of the National Academy of Sciences of the United States of America, 2009
737 citations recorded by the source corpus.
Subfields: Genetics, Molecular Biology
View Paper: https://www.semanticscholar.org/paper/e9bc6b4ccf0063ce1c9268acd1e70e9bd687947d
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In Genetics
In Molecular Biology
- Dima Kozakov
- Xin-Qiu Yao
- Barry J. Grant
- John Karanicolas
- Matthieu Wyart
- Carolina Brito
- Riccardo Ravasio
- Le Yan
Citations in the corpus
- Structure and dynamics of molecular networks: A novel paradigm of drug discovery: A comprehensive review (2012, background): “These multiple trajectories often converge at intermodular residues of protein structure networks (Pan et al., 2000; Chennubhotla & Bahar, 2006; Ghosh & Vishveshwara, 2007, 2008; Tang et al., 2007; Daily et al., 2008; Sethi et al., 2009; Tehver et al., 2009; Vishveshwara et al., 2009; Csermely et al”
- Allostery in Its Many Disguises: From Theory to Applications (2019, methodology): “Rivalta and colleagues used classical MD simulations and a community network analysis (Sethi et al., 2009), not unlike that of Palermo and McCammon, to elucidate the allosteric regulation in the imidazole glycerol phosphate synthase from Thermotoga maritima (Rivalta et al.”
- The Bio3D packages for structural bioinformatics (2020, methodology): “24 The method employs a similar idea to that used in the previous dynamical network method, where 8 However, in eCNA, instead of using a single distance cutoff-based contact map, network edges are defined by significant correlations across multiple conformational ensembles (e.g., multiple…”
- Induced fit, conformational selection and independent dynamic segments: an extended view of binding events (2010, positive): “Panel A: key inter-modular links and their end-point residues of Glu-tRNA synthase at the centre of the majority of shortest paths connecting nodes in different communities of the residue-network are marked with red lines and spheres [39].”