IBD (Isolation by Distance): a program for analyses of isolation by distance.

By Andrew J. Bohonak. Journal of Heredity, 2002

861 citations recorded by the source corpus.

Subfields: Genetics, Plant Science

View Paper: https://www.semanticscholar.org/paper/e72e6cee5f8105870cd6b64f4157513bd6db4058

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Genetics

1. L. Packer
2. Gabriele Procaccini
3. Jeanine L. Olsen
4. H. Toro
5. E. Serrão
6. M. Valero
7. H. Macdonald
8. S. Connell

In Plant Science

1. Tom Moens
2. S. Derycke
3. M. Vincx
4. L. Packer
5. H. Toro
6. E. Serrão
7. M. Valero
8. Jeanine L. Olsen

Citations in the corpus

• Phylogeographic information systems: putting the geography into phylogeography (2006, background): “It seems highly likely that GIS will become a central tool in the future of phylogeography through its ability to link disparate organism studies explicitly to each other and to the environmental context in which the variation formed, through the common language of geospatial referencing.”
• Mitochondrial DNA variation and cryptic speciation within the free-living marine nematode Pellioditis marina (2005, methodology): “The strength of the IBD relationship was determined with reduced major axis (RMA) regression as implemented in the program IBD 1.5 (Bohonak 2002).”
• Combining genetic and geospatial analyses to infer population extinction in mygalomorph spiders endemic to the Los Angeles region (2006, methodology): “Correlations between genetic and geographic distance were based on a Mantel test matrix correlation with 10 000 randomizations, implemented in the computer program IBD version 1.52 (Bohonak, 2002).”
• Population genetics of dwarf eelgrass Zostera noltii throughout its biogeographic range (2004, positive): “…1984) in GENETIX 4.02 were correlated with the log of geographical distance (1-dimensional stepping stone model) using matrix correlation methods based on the Mantel test (Manly 1994) in the IBD 1.2 program with 10 000 randomizations (http://www.bio.sdsu.edu/pub/ andy/IBD.html) (Bohonak 2002).”
• Spatiotemporal analysis of population genetic structure in Geomonhystera disjuncta (Nematoda, Monhysteridae) reveals high levels of molecular diversity (2007, methodology): “The isolation-by-distance model was tested with IBD 1.5 (Bohonak 2002) for those lineages occurring in several locations at both time points (Gd1 and Gd3).”
• The phylogeographic architecture of the fucoid seaweed Ascophyllum nodosum: an intertidal ‘marine tree’ and survivor of more than one glacial–interglacial cycle (2010, methodology): “Isolation by distance (IBD) was evaluated by plotting pairwise estimates of FST/(1)FST) against the log of the geographical distances and tested with the Mantel test using IBD (Bohonak, 2002).”
• Isolation by distance in the scleractinian coral Seriatopora hystrix from the Red Sea (2005, methodology): “To test for a correlation between geographic and genetic distances, we performed a Mantel test (Mantel 1967) using IBD (Bohonak 2002), which compares the matrices of pairwise genetic and geographic distances.”
• Concordant molecular and phenotypic data delineate new taxonomy and conservation priorities for the endangered mountain yellow‐legged frog (2007, methodology): “5 (Bohonak, 2002) using full and partial Mantel tests (20 000 randomizations).”
• Increased genetic differentiation in a specialist versus a generalist bee: implications for conservation (2006, methodology): “using a Mantel test (1000 randomizations) as implemented in IBD 1.4 ( Bohonak 2002 ).”
• Extreme genetic diversity and temporal rather than spatial partitioning in a widely distributed coral reef fish (2007, methodology): “Because populations that are spatially widely separated may be partitioned according to an isolation by distance model (Slatkin 1993), genetic structure among population pairs (using pairwise F st values) was examined as a function of geographic distances between population pairs as implemented in I”
• Variation in the strength of continental boundary currents determines continent‐wide connectivity in kelp (2011, methodology): “Tests of isolation by distance were done via Mantel tests using the program IBD (Bohonak 2002).”
• Habitat fragmentation reduces genetic diversity and connectivity among toad populations in the Brazilian Atlantic Coastal Forest (2009, methodology): “52 (Bohonak, 2002); the significance of the association was measured using 1000 randomizations.”