FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

By Nhu H. Nguyen, Zewei Song, S. Bates, S. Branco, Leho Tedersoo, Jon R. Menke, J. Schilling, P. Kennedy. 2016

3,848 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/e4d933cc507975ae8da9ec7de7d809d50d821eba

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Citations in the corpus

Soil microbial diversity during 30 years of grassland restoration on the Loess Plateau, China: Tight linkages with plant diversity (2019, methodology): “The potential functional traits of bacteria and fungi were predicted by using PICRUSt (Langille et al., 2013) and FUNGuild (Nguyen et al., 2016), respectively.”
Plant intraspecific variation modulates nutrient cycling through its below ground rhizospheric microbiome (2019, methodology): “Fungal taxonomic assignment was used to classify OTUs into guilds by using FUNguild (Nguyen et al., 2016) and according to Tedersoo et al. (2014).”
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes (2018, background): “For details of substrate preference the reader is referred to FUNGuild (Nguyen et al., 2016, https://github.c om/UMNFuN/FUNGuild).”
Do soil‐borne fungal pathogens mediate plant diversity–productivity relationships? Evidence and future opportunities (2020, methodology): “For instance, the open annotation tool FUNGuild (Nguyen et al., 2016) makes it possible to separate fungal OTUs into broad ecological guilds (e.g. saprotrophs, pathogens or mycorrhizal fungi), independent of sequencing platform or analysis pipeline.”
Cover cropping and no-till increase diversity and symbiotroph:saprotroph ratios of soil fungal communities (2019, methodology): “To identify different functional groups within fungal communities and link their relative abundance to particular management practices, we used a recently developed open annotation tool (FunGuild (Nguyen et al., 2016)”
High-level classification of the Fungi and a tool for evolutionary ecological analyses (2018, background): “…identification to species, genera and higher taxonomic levels is a key for reliable assignment of ecological and functional traits to taxa for further ecophysiological and biodiversity analyses (Kõljalg et al. 2013; Jeewon and Hyde 2016; Nguyen et al. 2016; Edgar 2017; Tedersoo and Smith 2017).”
Soil Bacterial and Fungal Response to Wildfires in the Canadian Boreal Forest Across a Burn Severity Gradient (2019, methodology): “We also classified ITS2 taxonomic assignments using the FunGuild database (Nguyen et al., 2016).”