Development and mapping of microsatellite (SSR) markers in wheat

By Qijian Song, Jianrong Shi, Sukhwinder Singh, E. Fickus, José M. Costa, Janet M. Lewis, Bikram S. Gill, R. Ward, Perry B. Cregan. Theoretical and Applied Genetics, 2005

647 citations recorded by the source corpus.

Subfields: Genetics, Plant Science

View Paper: https://www.semanticscholar.org/paper/e33cd17edf45dacd8ec8f0daed0320dc02268f5f

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In Genetics

1. K. Semagn
2. Å. Bjornstad
3. J. Dubcovsky
4. Jianming Yu
5. M. Sorrells
6. Chengsong Zhu
7. A. Börner
8. S. Chao

In Plant Science

1. K. Semagn
2. Å. Bjornstad
3. M. Sorrells
4. J. Dubcovsky
5. A. Börner
6. Jianming Yu
7. S. Chao
8. Chengsong Zhu

Citations in the corpus

• Saturation and comparative mapping of a major Fusarium head blight resistance QTL in tetraploid wheat (2007, background): “A number of molecular marker loci have been identified and mapped on chromosome 3A ( Song et al. 2005; http://www.scabusa.org/pdfs/BARC_ SSRs_011101.html; Somers et al. 2004; http:// wheat.pw.usda.gov/ggpages/SSR/WMC/WMCPri 13.xls).”
• Quantitative trait loci for yield and related traits in the wheat population Ning7840 × Clark (2006, methodology): “Detailed SSR genetic maps are now available for wheat (Röder et al. 1998, 2002; Pestsova et al. 2000; Somers et al. 2004; Song et al. 2005).”
• Diagnostic microsatellite markers for the detection of stem rust resistance gene Sr36 in diverse genetic backgrounds of wheat (2008, methodology): “Since Sr36 was mapped on the short arm of chromosome 2BS (Gyarfas, 1978; Bariana et al., 2001), microsatellite markers used in this study were based on previously published wheat genetic maps of chromosome 2BS (Röder et al., 1998; Somers et al., 2004; Song et al., 2005).”
• Molecular markers: actual and potential contributions to wheat genome characterization and breeding (2007, background): “New markers have continuously been added to available maps (Stephenson et al. 1998; Gupta et al. 2002; Song et al. 2005).”
• Genetic Diversity, Population Structure, and Linkage Disequilibrium in U.S. Elite Winter Wheat (2010, methodology): “…one position were assigned by aligning the Ta-SSR-2004 map with either the wheat composite 2004 map (http://wheat.pw.usda.gov; verifi ed 11 Aug. 2010) or the Ta-Synthetic/Opata-SSR map (Song et al., 2005) and by comparing fragment size for markers with known position on GrainGenes if available.”
• Development and Characterization of Microsatellite Markers for the Grain Amaranths (2008, background): “In wheat ( Triticum aestivum L.), for example, Song et al. (2002, 2005) reported that among trinucleotide repeats, the AAT motif is the most polymorphic.”
• SSR and STS markers for wheat stripe rust resistance gene Yr26 (2008, background): “Two, BARC181 and WMC419, were polymorphic between the DNA bulks and parents.”
• Whole genome mapping in a wheat doubled haploid population using SSRs and TRAPs and the identification of QTL for agronomic traits (2008, methodology): “The genetic lengths of published hexaploid wheat maps ranged from 2,360 to 4,110 cM (Chalmers et al. 2001; Groos et al. 2002; Liu et al. 2005; Paillard et al. 2003; Quarrie et al. 2005; Somers et al. 2004; Song et al. 2005; Sourdille et al. 2003; Torada et al. 2006).”
• Evaluation of Genetic Diversity and Genome‐wide Linkage Disequilibrium among U.S. Wheat (Triticum aestivum L.) Germplasm Representing Different Market Classes (2007, methodology): “Altogether 1619 genomic and EST-derived SSR primer pairs were assayed in this study (Table 2). The marker identifi ers and sources of the primer sequences for genomic SSR markers were gwm (Roder et al., 1998); gdm (Pestsova et al., 2000); barc ( Song et al., 2002, 2005 ); cfa and cfd (Sourdille et a”
• Abundance of SSR Motifs and Development of Candidate Polymorphic SSR Markers (BARCSOYSSR_1.0) in Soybean (2010, background): “In wheat, less than 67% of the primer pairs designed from wheat SSR sequences amplifi ed PCR products with expected size, and the polymorphism rate of the resulting SSR markers was lower than 30% (Bryan et al., 1997; Roder et al., 1995; Song et al., 2002, 2005).”
• Principles, requirements and prospects of genetic mapping in plants (2006, neutral): “…(ITMI) population (Synthetic/Opata) is one of the most extensively mapped population (Nelson et al., 1995a,b,c; Van Deynze et al., 1995; Marino et al., 1996; Roder et al., 1998; Song et al., 2005) with 1468 markers scored for 115 recombinant inbred (RI) lines (http://wheat.pw.us- 2578 Afr.”
• Mapping the compactum locus in wheat (Triticum aestivum L.) and its relationship to other spike morphology genes of the Triticeae (2008, neutral): “aestivum (Song et al. 2005).”
• QTLs for Fusarium head blight response in a wheat DH population of Wangshuibai/Alondra‘s’ (2006, methodology): “One-hundred-and-four markers exhibited 1:1 ratios of random segregation, and were mapped on 18 chromosomes with at least two markers in each chromosome, based on published information from SSR maps (R¨ oder et al., 1998; Song et al., 2005 ).”