Auxin-responsive gene expression: genes, promoters and regulatory factors

By G. Hagen, T. Guilfoyle. Plant Molecular Biology, 2002

1,221 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/e2da859193e565f3a16afe8560edc46b33d90382

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In Molecular Biology

1. David P. Bartel
2. B. Bartel
3. A. Mallory
4. James C. Carrington
5. Xuemei Chen
6. J. Reed
7. Jian‐Kang Zhu
8. Qing Tian

In Plant Science

1. David P. Bartel
2. B. Bartel
3. A. Mallory
4. James C. Carrington
5. Jian‐Kang Zhu
6. Xuemei Chen
7. Noah Fahlgren
8. Todd A. Anderson

Citations in the corpus

• Regulation of Somatic Embryogenesis in Higher Plants (2010, background): “These include GH3s (Hagen et al., 1984; Gee et al., 1991), PINs (Friml et al., 2003), Aux/IAAs (Eckardt, 2001; Leyser, 2002; Hagen and Guilfoyle, 2002; Weijers et al., 2005), and auxin response factors (ARFs; Hardtke and Berleth, 1998; Mattsson et al., 2003), as well as small auxin-up RNAs (SAURs; J”
• Genome-wide analysis of the auxin response factor (ARF) gene family in maize (Zea mays) (2011, background): “ARFs can specifically bind to TGTCTC-containing Aux-REs and mediate responses to the plant hormone auxin (Li et al. 1994; Hagen and Guilfoyle 2002 ).”
• The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs (2005, background): “Aux/IAAs can dimerize with ARFs, and repress the ability of ARFs to activate gene expression in protoplast transfection assays (Abel and Theologis, 1996; Ulmasov et al., 1997; Leyser, 2002; Liscum and Reed, 2002; Hagen and Guilfoyle, 2002; Tiwari et al., 2003).”
• Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis. (2006, background): “Members of the ARF family generally function by interaction with auxin response elements after dissociating from inhibitory AUX/IAA proteins in the presence of auxin [16, 17].”
• The Regulation of Brassinosteroid Biosynthesis in Arabidopsis (2013, background): “In the DWF4 promoter, the following cognate sequences for transcription factors are present: three BRRE motifs (Chung et al., 2011), one Aux/IAA response element (Aux/IAA-RE, TGTCTC)(Ulmasov et al., 1997a; Ulmasov et al., 1997b), and one Aux/IAA-RE-like element (TGTGCTC)(Hagen and Guilfoyle, 2002).”
• The Roles of Auxin Response Factor Domains in Auxin-Responsive Transcription Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.008417. (2003, background): “The plant hormone auxin regulates a variety of genes, the most thoroughly studied of which include the Aux/IAA , GH3 , and SAUR gene families (reviewed by Guilfoyle, 1999; Hagen and Guilfoyle, 2002).”
• Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction (2006, background): “ARF proteins bind to auxin response promoter elements and mediate gene expression responses to the plant hormone auxin (Hagen and Guilfoyle, 2002; Liscum and Reed, 2002; Mallory et al., 2005; Tiwari et al., 2003).”
• The Role of Phytohormones in Alleviating Salt Stress in Crop Plants (2011, background): “A large number of auxinresponsive genes have been identified and characterized from different plant species, including soybean, Arabidopsis and rice (Hagen and Guilfoyle 2002).”
• Salicylic acid inhibits pathogen growth in plants through repression of the auxin signaling pathway. (2007, background): “Theserepressedgenesinclude AUX1 and PIN7 , encoding an auxin importer and exporter, respectively [13, 14]; genes for the auxin receptors TIR1 and AFB1; and the well-characterized auxin-inducible SAUR genes and Aux/IAA -family genes [15].”
• MicroRNA-Directed Regulation of Arabidopsis AUXIN RESPONSE FACTOR17 Is Essential for Proper Development and Modulates Expression of Early Auxin Response Genesw⃞ (2005, background): “By contrast, ARF17 is unusual because it lacks a conserved CTD, which is present in 21 of 23 Arabidopsis ARF proteins (Ulmasov et al., 1997, 1999a; Hagen and Guilfoyle, 2002).”
• Plant microRNA: a small regulatory molecule with big impact. (2006, background): “ARFs regulate the expression of auxin-inducible genes, such as GH3 and auxin/indole-3-acetic acid (Aux/ IAA) by binding auxin response promoters (AREs) (Hagen and Guilfoyle, 2002).”