Faculty Opinions recommendation of Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

By Bernd Weisshaar. 2010

836 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/dc272137df0226c64bf39c7f13b0f2dc5a6ef66a

Citations in the corpus

• Genome Wide Association Mapping of Sclerotinia sclerotiorum Resistance in Soybean with a Genotyping‐by‐Sequencing Approach (2014, unknown): “Genome-wide association mapping has been shown to have the potential to dissect the genetic basis of complex traits in Arabidopsis thaliana (Atwell et al., 2010) and rice (Oryza sativa L.”
• Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach (2012, unknown): “architecture of complex traits and its application in breeding programs for crop improvement through whole genome association studies [12,13] and genomic selection [14,15].”
• It is all in the noise: Efficient multi-task Gaussian process inference with structured residuals (2013, unknown): “As a second dataset, we considered a genome-wide association study in Arabidopsis thaliana [15] to assess the prediction of developmental phenotypes from genomic data.”
• Potential for evolutionary responses to climate change – evidence from tree populations (2013, unknown): “The dispersal capacity of tree species will play a crucial role in their potential for adaptation.”
• SNP Discovery through Next-Generation Sequencing and Its Applications (2012, unknown): “Until recently large scale SNP discovery in plants was limited to maize, Arabidopsis , and rice [11–15].”
• Natural variations and genome-wide association studies in crop plants. (2014, unknown): “Different from GWAS in humans, GWAS in crops usually use a permanent resource— a population of diverse (and preferably homozygous) varieties that can be rephenotyped for many traits and only needs to be genotyped once—and one can subsequently generate specific mapping populations for specific traits”
• Epigenomic diversity in a global collection of Arabidopsis thaliana accessions (2016, unknown): “The non-relict modules showed no or weak correlation with flowering time (Atwell et al., 2010; Figure S4C), suggesting that coexpression is unlikely driven by developmental stage at the time of sam- 498 Cell 166, 492–505, July 14, 2016 ple collection.”
• GAPIT Version 2: An Enhanced Integrated Tool for Genomic Association and Prediction (2016, unknown): “Unfortunately, this reduction of false positives can also increase false negatives through confounding phenotypes with population structure and individuals’ total genetic effects (Atwell et al., 2010).”
• Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population (2011, unknown): “Such LD can arise even without physical linkage owing to population stratification, greatly complicating the interpretation of GWA results in diverse population sample”