Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes
By D. Bertrand, Jim Shaw, Manesh Kalathiyappan, A. Ng, M. S. Kumar, Chenhao Li, Mirta Dvorničić, J. Soldo, Jia Yu Koh, C. Tong and 7 more. Nature Biotechnology, 2019
298 citations recorded by the source corpus.
Subfields: Ecology, Molecular Biology
View Paper: https://www.semanticscholar.org/paper/48f45f74b79c1f8a9010d4b76b980e1d91ff2de6
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Citations in the corpus
- Nanopore sequencing technology, bioinformatics and applications (2021, methodology): “For example, genome 105 , transcriptome 42 and metagenome 106 assemblies have shown superior performance with hybrid sequencing data compared to either error-prone long reads alone or high-accuracy short reads alone.”
- Effect of ammonia on anaerobic digestion of municipal solid waste: Inhibitory performance, bioaugmentation and microbiome functional reconstruction (2020, methodology): “The best MAGs among the different assemblies and binning results were chosen using metaWRAP [39] and finally 26, 21 and 20 MAGs were obtained from metaspades, OPERA-MS and unicycler, respectively.”
- A practical guide to amplicon and metagenomic analysis of microbiome data (2020, methodology): “Recently developed third-generation sequencing techniques have been used for metagenome analysis, including Paci fi c Biosciences (Pac-Bio) single molecule real time sequencing and the Oxford Nanopore Technologies sequencing platform (Bertrand et al., 2019; Stewart et al., 2019; Moss et al., 2020).”