Protein structure prediction servers at University College London
By Kevin Bryson, Liam J. McGuffin, Russell L. Marsden, Jonathan J. Ward, Jaspreet Singh Sodhi, David T. Jones. Nucleic Acids Res., 2005
783 citations recorded by the source corpus.
A number of state-of-the-art protein structure prediction servers have been developed by researchers working in the Bioinformatics Unit at University College London. The popular PSIPRED server allows users to perform secondary structure prediction, transmembrane topology prediction and protein fold recognition. More recent servers include DISOPRED for the prediction of protein dynamic disorder and DomPred for domain boundary prediction. These servers are available from our software home page at .
Subfields: Molecular Biology
View Paper: https://www.semanticscholar.org/paper/dbb10d6d93247b5334c969790bc4dbbe505e9469
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Citations in the corpus
- Ribose 2′-O-methylation provides a molecular signature for the distinction of self and non-self mRNA dependent on the RNA sensor Mda5 (2011, positive): “Amino acid sequences were aligned with ClustalW2 and were manually adjusted on the basis of published structural data and protein secondary structure predictions of the PSIPRED server 43 .”
- Outcome of a Workshop on Applications of Protein Models in Biomedical Research (2009, background): “The secondary structure, transmembrane segments, and disordered regions can be predicted from a protein sequence (Bryson et al., 2005; Rost, 2003); an atomic model of a domain can be obtained from the sequence alone by ab initio or de novo prediction methods (Das and Baker, 2008); fold assignment…”
- Computational prediction of secondary and supersecondary structures. (2013, methodology): “A recent review (37) reported that seven methods were cited over 100 times and two of them, PSIPRED (36, 38, 39) and PHD (40, 41) were cited over 1300 times.”
- GOMoDo: A GPCRs Online Modeling and Docking Webserver (2013, methodology): “Secondary structure information is added to the alignment using PSI-PRED [25].”
- Critical assessment of high-throughput standalone methods for secondary structure prediction (2011, methodology): “We include web servers for the two homology-based methods, SSpro [17] and PROTEUS [31], the well-performing ab-initio PSIPRED [21] and PORTER [24], for which the web server includes homology modeling.”