Aspects of Protein Reaction Dynamics: Deviations from Simple Behavior

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Stochastic mechano-chemical kinetics of molecular motors: A multidisciplinary enterprise from a physicist’s perspective (2012, background): “In general, the conformational dynamics of proteins [133] span a wide range of length and time scales- from a fraction of nanometer to tens of nanometers and from femtoseconds to seconds, or even longer [314].”
The protein folding network. (2004, background): “Transition state ensemble As mentioned above folding is a complex process with many degrees of freedom involved and it is diﬃcult (or even not possible) to deﬁne a single reaction coordinate to monitor folding events 34,35 .”
Allostery and cooperativity revisited (2008, background): “Once a tertiary structural change takes place as each ligand binds, the tetramer has a higher probability of diffusing from the T state toward the R state (Karplus 2000), which is now relatively more stable.”