Data Analysis in Molecular Biology and Evolution

By Xuhua Xia. Springer US, 2002

724 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/d127e2d0c1927252afba85006db69ce4fab6b2c4

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Molecular Biology

1. Xuhua Xia
2. M. Wink
3. U. Joger
4. R. Lawson
5. Z. Xie
6. Z. Nagy
7. Feng-Chi Chen
8. Wen-Hsiung Li

Citations in the corpus

• DAMBE: software package for data analysis in molecular biology and evolution. (2001, methodology): “For the distance methods, the test is similar to that detailed in Xia (2000), except that the following equation (2000).”
• An index of substitution saturation and its application. (2003, methodology): “The forth approach (Steel et al., 1995; Steel et al., 1993) has just been imple- mented in DAMBE (Xia, 2000; Xia and Xie, 2001) with a few extensions.”
• DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution (2013, methodology): “Since its first release (Xia 2001; Xia and Xie 2001b), DAMBE is now listed as one of the most widely used software packages in molecular phylogenetics (Salemi and Vandamme 2003; Felsenstein 2004; Lemey et al. 2009).”
• Molecular systematics of racers, whipsnakes and relatives (Reptilia: Colubridae) using mitochondrial and nuclear markers (2004, methodology): “Measuring of substitution saturation has been done using dambe 4.1.15 (Xia 2000, Xia and Xie 2001) for mitochondrial and c-mos sequences, respectively.”
• Positive selection at reproductive ADAM genes with potential intercellular binding activity. (2004, methodology): “Amino acid sequence alignments were obtained using the ClustalW program within the DAMBE software package and used to generate nucleotide alignments (Xia 2000).”
• Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. (2001, methodology): “The DAMBE package (Xia 2000) was used for sequence alignment, calculation of genetic distance, and phylogenetic reconstruction.”