vegan : Community Ecology Package. R package version 1.8-5

By Jari Oksanen, F. Blanchet, Roeland Kindt, Pierre Legendre, R. O’Hara, G. Simpson, P. Minchin. 2007

13,513 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/ce62be133614e05a8a63c39743e42a43765a5db0

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Citations in the corpus

genodive version 3.0: Easy‐to‐use software for the analysis of genetic data of diploids and polyploids (2020, methodology): “Currently, four such add-ins are available: in - struct (Gao, Williamson, & Bustamante, 2007), lfmm (Frichot et al., 2013), Redundancy Analysis using vegan in r (Oksanen et al., 2015), and structure (Pritchard et al., 2000).”
Microbial richness and composition independently drive soil multifunctionality (2017, methodology): “We conducted NMDS ordinations with the package Vegan from R (Oksanen et al., 2017), using the Bray–Curtis distance.”
Species invasions threaten the antiquity of China's freshwater fish fauna (2017, methodology): “All the analyses were performed in R 3.2.0 (R Development Core Team, 2014) using the packages BAT (Cardoso et al., 2015) and VEGAN (Oksanen et al., 2015).”
Erosion reduces soil microbial diversity, network complexity and multifunctionality (2021, methodology): “Analysis (CPCoA) through the capscale function implemented in the vegan R library [60, 61].”
Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study (2019, unknown): “Creatine kinase (U/L) 90 (64) 96 (100) 111 (48,50) 0,68b 0,48 0,33”
Dung beetles as indicators of tropical forest restoration success: Is it possible to recover species and functional diversity? (2014, methodology): “This analysis was implemented using the vegan package and rarefy function (Oksanen et al., 2013) in the R software (R Development Core Team, 2012).”
Breaking with tradition: redefining measures for diet description with a case study of the Aleutian skate Bathyraja aleutica (Gilbert 1896) (2011, methodology): “Homogeneity of multivariate dispersion in regional diet composition was statistically tested by permutation ANOVA (Anderson 2006; Oksanen et al. 2011).”
Functional classifications and their application in phytoplankton ecology (2015, methodology): “This issue was addressed by Padis ak et al. (2009), where a number of misplacements were identified.”
Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance (2017, unknown): “4-1 Oksanen et al., 2016 https://cran.r-project.org/web/packages/ vegan/index.html R Package: indicspecies v1.”
Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics (2017, methodology): “We used the PERMANOVA (R adonis vegan) [52] test to measure the degree of similarity of the bacterial communities between the samples in the study.”
Local and landscape management drive trait‐mediated biodiversity of nine taxa on small grassland fragments (2015, methodology): “For the nine taxa, partial redundancy analyses (RDAs) with all three explanatory variables (management, connectivity and percentage of arable land) were performed with function rda from R package vegan (Oksanen et al., 2013).”