BioMOBY: An Open Source Biological Web Services Proposal

By Mark D. Wilkinson, Matthew G. Links. Briefings Bioinform., 2002

390 citations recorded by the source corpus.

Subfields: Artificial Intelligence, Information Systems and Management, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/cd0fb24dc77a7f887607661dae2e7f0fdd35f40f

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Artificial Intelligence

1. Sean Bechhofer
2. Robert Stevens
3. C. Wilks
4. Alan J. Robinson
5. David De Roure
6. Carole A. Goble
7. Michal Keller
8. Ian Horrocks

In Information Systems and Management

1. Robert Stevens
2. Alan J. Robinson
3. David De Roure
4. Carole A. Goble

In Molecular Biology

1. Christopher W. V. Hogue
2. Robert Stevens
3. Sean Bechhofer
4. C. Wilks
5. Alan J. Robinson
6. T. Oinn
7. Michael Ashburner
8. Ian M. Donaldson

Citations in the corpus

• State of the nation in data integration for bioinformatics (2008, background): “BioMOBY [49] [50] is an example of a system Fig.”
• The Arabidopsis Information Resource (TAIR): gene structure and function annotation (2007, methodology): “Currently TAIR has four web services in the production BioMoby registry: Locus2SpliceVariants, Locus2GOIDs, Locus2Publications and Locus2GeneAliases.”
• myGrid: personalised bioinformatics on the information grid (2003, methodology): “myGrid’s registry and ontologies for bioinformatics services are being developed in collaboration with the BioMOBY project (Wilkinson and Links, 2002) and the Interoperable Informatics Infrastructure Consortium (http://www.”
• FlyMine: an integrated database for Drosophila and Anopheles genomics (2007, background): “Other systems send queries out to several different sources and use a mediated middle layer to integrate the information (so called mediated systems such as TAMBIS [17], DiscoveryLink [18] and BioMoby [19]).”
• myExperiment: a repository and social network for the sharing of bioinformatics workflows (2010, background): “htm; (25)] supports ontology-guided workflow designs that are subsequently mapped onto real services, such as BioMOBY (26).”
• The Biomolecular Interaction Network Database and related tools 2005 update (2004, methodology): “SeqHound is used as supporting data warehouse infrastructure for the BioMoby (23) bioinformatics middleware and Taverna (24) bioinformatics workflow projects and is being further supported in BioPerl (25) for automating bioinformatics analyses.”
• Taverna: a tool for the composition and enactment of bioinformatics workflows (2004, methodology): “Work is in progress to link the Scufl workbench with service registries such as those offered by the myGrid (Lord et al., 2003) and Bio- Moby ( Wilkinson and Links, 2002 ) projects.”