DNAPlotter: circular and linear interactive genome visualization
By T. Carver, N. Thomson, A. Bleasby, Matthew Berriman, Julian Parkhill. Bioinform., 2008
868 citations recorded by the source corpus.
Summary: DNAPlotter is an interactive Java application for generating circular and linear representations of genomes. Making use of the Artemis libraries to provide a user-friendly method of loading in sequence files (EMBL, GenBank, GFF) as well as data from relational databases, it filters features of interest to display on separate user-definable tracks. It can be used to produce publication quality images for papers or web pages. Availability: DNAPlotter is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute web sites: http://www.sanger.ac.uk/Software/Artemis/circular/ Contact: artemis@sanger.ac.uk
Subfields: Molecular Biology
View Paper: https://www.semanticscholar.org/paper/ccf46a1bb325e0375239aed2cd4348f885de927b
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Molecular Biology
- Michael F. Lawrence
- D. Cook
- Nabil-Fareed Alikhan
- Nicola K. Petty
- Scott A. Beatson
- Tengfei Yin
- Nouri L. Ben Zakour
- Paul Stothard
Citations in the corpus
- Interactive microbial genome visualization with GView (2010, neutral): “The application, source code, documentation, file specifications, tutorials and image galleries are available at http://gview.ca Contact: gary.van.domselaar@phac-aspc.gc.ca Received on July 26, 2010; revised on September 28, 2010; accepted on October 13, 2010”
- ggbio: an R package for extending the grammar of graphics for genomic data (2012, methodology): “There are many software packages that provide a circular overview plot, including Circos [10], CGView [23] and DNAplotter [24].”
- BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons (2011, methodology): “Unlike DNAPlotter, BRIG does not show a preview of the image as the user edits it and only produces an image after the user has specified all of their settings.”