SNiPA: an interactive, genetic variant-centered annotation browser
By M. Arnold, Johannes Raffler, A. Pfeufer, Karsten Suhre, G. Kastenmüller. Bioinform., 2014
309 citations recorded by the source corpus.
Motivation: Linking genes and functional information to genetic variants identified by association studies remains difficult. Resources containing extensive genomic annotations are available but often not fully utilized due to heterogeneous data formats. To enhance their accessibility, we integrated many annotation datasets into a user-friendly webserver. Availability and implementation: http://www.snipa.org/ Contact: g.kastenmueller@helmholtz-muenchen.de Supplementary information: Supplementary data are available at Bioinformatics online.
Subfields: Genetics, Molecular Biology
View Paper: https://www.semanticscholar.org/paper/c9b7b26ea7e747c4302a9f22b3f9847064ba9187
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In Genetics
- Stephen Burgess
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- George Davey Smith
- J. Bowden
- S. Thompson
- E. Sanderson
Citations in the corpus
- PhenoScanner: a database of human genotype–phenotype associations (2016, methodology): “The Perl interface annotates the variant alleles using dbSNP, identifies proxies of the specified variants (if requested) in the database according to a user-specified pairwise r 2 threshold, and queries the catalogue of genotype–phenotype associations for the specified variants and their proxies.”