ModLoop: automated modeling of loops in protein structures

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UCSF Chimera, MODELLER, and IMP: an Integrated Modeling System (2011, background): “…implements comparative modeling by satisfaction of spatial restraints (Sali and Blundell, 1993) and can perform many additional tasks, including fold assignment, sequence-and structure-based alignments, de novo modeling of loops, and model assessment (Fiser and Sali, 2003; Fiser et al., 2000).”
Comparative Protein Structure Modeling Using Modeller (2006, methodology): “ModLoop ( http://salilab.org/modloop/ ; Fiser and Sali, 2003b) takes as input a protein structure and one or more residue ranges.”
Comparative Protein Structure Modeling Using MODELLER (2016, methodology): “ModLoop (http://salilab.org/modloop/; Fiser and Sali, 2003b) takes as input a protein structure and one or more residue ranges.”
Comparative Protein Structure Modeling Using MODELLER (2016, methodology): “ModLoop ( http://salilab.org/modloop/ ; Fiser and Sali, 2003b) takes as input a protein structure and one or more residue ranges.”
Comparative Protein Structure Modeling Using MODELLER (2007, methodology): “Correspondingly, the average model accuracy increased from 43% to 54% (the model accuracy was measured as the percentage of the C α atoms of the model that were within 5 ◦ A of the corresponding C α atoms in the superimposed native structure).”