adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

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Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality (2015, methodology): “Both functions utilize adegenet ’s “genlight” object class, which eﬃciently stores 8 binary alleles in a single byte (Jombart and Ahmed, 2011).”
PopGenReport: simplifying basic population genetic analyses in R (2014, methodology): “It improves on the existing DF 2 GENIND function in ADE-GENET (Jombart 2008 and Jombart & Ahmed 2011) by auto-mating the process of importing latitudes and longitudes and other ‘extra’ data in genind objects.”
dartr: An r package to facilitate analysis of SNP data generated from reduced representation genome sequencing (2018, methodology): “The genlight format of the ADEGENET package uses a bit-level coding scheme for SNP data, that is highly compact and brings access to exceptionally large SNP data sets to the desktop computer (Jombart & Ahmed, 2011).”
Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction (2014, methodology): “To aid in importing data, poppr has newly added the function read.genalex() , to read data from GenAlEx formatted text ﬁles into the genind data object of the package adegenet [22,23,26].”