Development of genome-wide SNP assays for rice

By Susan McCouch, Keyan Zhao, M. Wright, Chih-Wei Tung, K. Ebana, M. Thomson, Andy Reynolds, Diane R. Wang, G. DeClerck, Md. Liakat Ali and 3 more. 2010

216 citations recorded by the source corpus.

Subfields: Genetics, Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/c641b659657e3d1f39e7cdfa4955ac8796313dfb

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Genetics

1. M. Thomson
2. G. Eizenga
3. A. McClung
4. Susan McCouch
5. Kenneth L. McNally
6. Carlos D. Bustamante
7. Ajay Kohli
8. Arvind Kumar

In Molecular Biology

1. A. Ismail
2. Carlos D. Bustamante
3. M. Thomson
4. G. Eizenga
5. A. McClung
6. G. Gregorio
7. Arvind Kumar
8. S. Jagadish

In Plant Science

1. M. Thomson
2. G. Eizenga
3. A. McClung
4. Arvind Kumar
5. R. Singh
6. Susan McCouch
7. Kenneth L. McNally
8. A. Ismail

Citations in the corpus

• High-Throughput SNP Genotyping to Accelerate Crop Improvement (2014, background): “…made possible by the large-scale deployment of new technologies for next-generation sequencing (NGS) and single-nucleotide polymorphism (SNP) genotyping (McCouch et al. 2010; Davey et al. 2011; Feuillet et al. 2011; Morrell et al. 2012; Poland and Rife 2012; Chen et al. 2013b; Huang et al. 2013).”
• Mapping QTL for heat tolerance at flowering stage in rice using SNP markers (2012, methodology): “The custom oligo pool assay (OPA) containing 384 well-distributed SNPs per assay was designed by Cornell University (McCouch et al. 2010) from a high-quality subset of the SNPs discovered in 20 diverse O.”
• Genetic Advances in Adapting Rice to a Rapidly Changing Climate (2012, background): “org) has provided an even larger SNP discovery pool, from which a 1-million-SNP chip has been developed and is being tested as part of a rice genetic diversity platform to dissect complex traits (McCouch et al. 2010).”
• High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform (2011, background): “Likewise, resequencing of over 100 varieties at 3–559 coverage through the Rice SNP Consortium (www.ricesnp.org) has provided an even larger SNP discovery pool from which a 1-million-SNP chip has been developed and is being tested (McCouch et al. 2010).”