Indices of multilocus linkage disequilibrium

By P. Agapow, A. Burt. 2001

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Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction (2014, methodology): “As of this writing, aside from poppr , there exist two programs that calculate I A : LIAN [21] and multilocus [20].”
Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality (2015, methodology): “It was standardized in 2001 as ¯ r d by Agapow and Burt (2001) to address the issue of scaling with increasing number of loci.”
Mycotoxin Production and Molecular Variability of European and American Isolates of Fusarium Culmorum (2004, methodology): “Index of association tests (IA) and parsimony tree length permutation tests (PTLPTs) were performed using the MULTILOCUS 1.2 software with 1000 randomizations (Agapow and Burt, 2001).”
Diversity and host association of the tropical tree endophyte Lasiodiplodia theobromae revealed using simple sequence repeat markers (2005, methodology): “Population differentiation (GST) as measured by theta (Weir 1996) was calculated between all pairs of clone-corrected populations in multilocus v. 1.3 (Agapow and Burt 2001).”