How important are transposons for plant evolution?

By D. Lisch. Nature reviews genetics, 2012

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Epigenetically facilitated mutational assimilation: epigenetics as a hub within the inclusive evolutionary synthesis (2018, background): “TEs are thus powerful facilitators of genomic evolution (Oliver & Greene, 2009) and have played a crucial role in major evolutionary transitions (Agrawal, Eastman & Schatz, 1998; Daboussi & Capy, 2003; Gonzalez et al., 2008; Lisch, 2013), including the evolution of hominid brain size, immune defence”
Evolution of Gene Duplication in Plants1[OPEN] (2016, background): “Gene body methylation is found to impact transcription (Lister et al., 2008; Takuno and Gaut, 2012), and divergence in methylation pattern between duplicates is significantly, although rather weakly, correlated with expression divergence in Arabidopsis (Wang et al., 2014a), rice (Wang et al.,…”
Epigenomic diversity in a global collection of Arabidopsis thaliana accessions (2016, neutral): “500 Cell 166, 492–505, July 14, 2016 Epigenome Variation Is Shaped by Genome Structural Variation Our methylome analyses were based on the Col-0 reference genome substituted with accession-specific SNPs and small deletions, but did not include structural variation (SV) information, which may also af”