ProtTest 3: fast selection of best-t models of protein evolution

By Diego Darriba, Guillermo L. Taboada, David Posada. 2011

1,675 citations recorded by the source corpus.

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1. Bui Quang Minh
2. A. von Haeseler
3. Minh Anh Nguyen
4. Lam-Tung Nguyen
5. Olga Chernomor
6. Jana Trifinopoulos
7. Heiko A. Schmidt
8. Diep Thi Hoang

Citations in the corpus

• Ultrafast Approximation for Phylogenetic Bootstrap (2013, methodology): “For the remaining 6,222 DNA and 6,182 protein alignments, we selected the best-fit models with the Bayesian information criterion using ModelTest (Posada and Crandall 1998) and ProtTest (Darriba et al. 2011), respectively.”
• FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies (2014, unknown): “Results and discussion FASconCAT-G accepts multiple nucleotide, amino acid, and structure sequence alignment input files and can perform sequence renaming, file format conversion, sequence translation of nucleotide and amino acid states, consensus generation of specific sequence blocks, sequence con”