A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

By Pablo E. Cingolani, A. Platts, Le Wang, M. Coon, Tung Nguyen, Luan Wang, S. Land, Xiangyi Lu, Douglas M. Ruden. 2012

10,590 citations recorded by the source corpus.

Subfields: Molecular Biology

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Molecular Biology

1. Abhishek Niroula
2. Aaron R. Quinlan
3. Gad Getz
4. Eric S. Lander
5. Matthew Meyerson
6. Cristen J. Willer
7. Arul M. Chinnaiyan
8. Mark Yandell

Citations in the corpus

• Genome evolution across 1,011 Saccharomyces cerevisiae isolates (2018, positive): “SnpEff (v.4.1) 54 was used to annotate and predict the effect of the variants.”
• Variation Interpretation Predictors: Principles, Types, Performance, and Choice (2016, background): “0 [Vuong et al., 2015], SnpEff [Cingolani et al., 2012], Variant Effect Predictor (VEP) [McLaren et al., 2010], and so on provide predictions of several predictors.”